AGENTS.md@infrastructure/researchA
AGENTS.md@infrastructure/research from docxology/template is an AGENTS.md file: the standing instructions coding agents read in that repo.
mdr add docxology/template/infrastructure/research/AGENTS.md@git:20260707.6e77eabPins git:20260707.6e77eab in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 14 of 14 checks passed
- Kind
- AGENTS.md file
- Repository
- docxology/template
- Path
infrastructure/research/AGENTS.md- Versions recorded
- 3
- Latest version
- git:20260707.6e77eab, committed Jul 7, 2026
- First version recorded
- Jul 6, 2026
- Size
- 4,688 bytes
- Repository stars
- 23
- License
- Apache-2.0
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Research Module — Agent Notes
## Purpose
`infrastructure/research` provides a programmatic definition of the
seven-stage research workflow and the agent-facing prompt text used to
operate research-mode and literature-review sub-agents. It is the entry
point for any AI agent doing scientific research within the template/
research infrastructure.
## Public API
```python
from infrastructure.research import ResearchWorkflow, ResearchStage
workflow = ResearchWorkflow()
# Markdown rendering of the full workflow (for agent context)
md = workflow.describe()
# Access individual stages (implemented stage names: scope, survey,
# hypothesise, experiment, validate, review, write — see Note below)
stage = workflow.stage("survey")
print(stage.description)
```
> **Note (doc/code drift, tracked for follow-up):** the table below and the
> rest of this file describe a richer OpenScience-ported 7-stage design
> (SCOPE/LITERATURE/REASON/DESIGN/COMPUTE/SYNTHESIZE/WRITE with per-stage
> sub-agent fan-out counts and template commands). The implemented
> `ResearchWorkflow`/`ResearchStage` in `workflow.py` is a simpler 7-stage
…Read the whole file at its exact version.
How to install
mdr add docxology/template/infrastructure/research/AGENTS.md@sha256:c08ed3d702ad707dThe line at the top of this page pins the label git:20260707.6e77eab, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_bi4uxdpvxebumuma)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 3 versions of this file, between Jul 6, 2026 and Jul 7, 2026, more than one a day.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260707.6e77eab latest | 2026-07-07 | 6e77eab | 4,688 B | A | view · diff |
| git:20260706.ade9b57 | 2026-07-06 | ade9b57 | 3,948 B | A | view · diff |
| git:20260706.11e587f | 2026-07-06 | 11e587f | 3,911 B | A | view |
Audit of the latest version
- pass: Size between 200 bytes and 200 KB (4688 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
docxology/template · 23 stars · license Apache-2.0 · pushed 2026-11-08 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_bi4uxdpvxebumuma GET https://markdownregistry.com/api/v1/resolve?ref=docxology/template/infrastructure/research/AGENTS.md GET https://markdownregistry.com/api/v1/blob/c08ed3d702ad707dd13b3e09ffe0999da2728717e27a75b744382108f7accf94
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: how to write a good AGENTS.md · AGENTS.md vs CLAUDE.md · which agent file does what.