AGENTS.md@docs/rxinfer git:20260906.82c8031B

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# RxInfer.jl Framework Documentation Agents

## Overview

This document provides agent scaffolding for the RxInfer.jl Framework documentation subsystem. The documentation is organized into specialized agent modules, each responsible for specific aspects of the RxInfer.jl Framework system.

**Status**: ✅ Documentation  
**Version**: 1.0  

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## Purpose

Documentation for the RxInfer.jl (Bayesian inference) framework integration with GNN. The integration is a genuine `@model` + `infer()` variational message-passing pipeline: `src/gnn/render/rxinfer/rxinfer_renderer.py` emits Julia scripts defining `@model pomdp_model(y, A, B, D, u, T)` with `Categorical` / `DiscreteTransition` nodes, and `src/gnn/execute/rxinfer/` executes them under a committed `Project.toml` + `Manifest.toml` env (RxInfer 5.5.0) via `julia --startup-file=no --project=src/gnn/execute/rxinfer <script>`.

## Documentation Organization

The RxInfer.jl Framework documentation system is part of the broader GNN (Generalized Notation Notation) pipeline and ecosystem.

### Related Systems
- **Main Documentation**: [doc/README.md](../README.md)
- **GNN Documentation**: [gnn/AGENTS.md](../gnn/AGENTS.md)
- **Pipeline Reference**: [src/gnn/AGENTS.md](../../src/gnn/AGENTS.md)
- **Active Inference**: [activeinference.org](https://activeinference.org)

## Subsystems

- **gnn_rxinfer.md**: GNN to RxInfer.jl model generation
- **Probabilistic modeling examples**
- Additional guides available in doc/rxinfer/

## Quick Navigation

- **Get Started**: See [README.md](README.md)
- **Pipeline Overview**: [src/gnn/AGENTS.md](../../src/gnn/AGENTS.md)
- **Full Documentation Index**: [doc/README.md](../README.md)

## Documentation Standards

All documentation in this subsystem follows the professional standards established in the GNN documentation system:

- **Clarity**: Concrete examples, technical accuracy
- **Functionality**: Shows what code actually does
- **Evidence-Based**: Specific metrics and real examples
- **Professional**: Clear structure, no promotional language

## Integration

This documentation integrates with the 25-step GNN processing pipeline:

1. **Pipeline Initialization** (Step 0): Template setup
2. **Environment Setup** (Step 1): Dependency installation
3. **Testing** (Step 2): Quality assurance
4. **Core Processing** (Steps 3-9): GNN parsing and validation
5. **Simulation** (Steps 10-16): Model execution and analysis
6. **Integration** (Steps 17-24): Output and reporting

See [src/gnn/AGENTS.md](../../src/gnn/AGENTS.md) for complete pipeline documentation.

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**Status**: ✅ Production Ready  
**Compliance**: Professional documentation standards  
**Maintenance**: Regular updates with new features