AGENTS.mdA

AGENTS.md from biosymphony/small-molecules is an AGENTS.md file: the standing instructions coding agents read in that repo.

Install it, pinned
mdr add biosymphony/small-molecules/AGENTS.md@git:20260830.9257ef9

Pins git:20260830.9257ef9 in mdr.lock. Pin the fingerprint instead.

Audit grade
A, 14 of 14 checks passed
Kind
AGENTS.md file
Repository
biosymphony/small-molecules
Path
AGENTS.md
Versions recorded
2
Latest version
git:20260830.9257ef9, committed Aug 30, 2026
First version recorded
Jun 21, 2026
Size
1,876 bytes
Repository stars
6
License
MIT

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# BioSymphony Small Molecules Agent Guide

Use this guide when you update the public skill repository.

## Mission

Maintain an agent-readable map of open small-molecule design tools: synthesis
planning, synthesizable generation, docking, co-folding, free energy, QSAR,
ADMET, selectivity, and structure-based generation.

The repository helps an agent choose a tool, review each license layer, and
distinguish model confidence from experimental evidence.

## Public Safety Rules

Do not add:

- API keys, provider credentials, signed URLs, SSH keys, or registry authentication
- local workstation paths or copied repository history
- pod IDs, network volume IDs, account IDs, raw provider logs, or cost ledgers
- non-public issue text, non-release planning notes, unpublished structures,
  non-public sequences, non-public assays, non-public datasets, raw reads,
  database mirrors, or model weights
- generated media or large demo artifacts unless they are reviewed for public
  release

Use only public structures, public tool metadata, synthetic examples, or compact
public demo artifacts. Cite the public repository, paper, model card, or license
file that supports each claim.
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint
mdr add biosymphony/small-molecules/AGENTS.md@sha256:491b50447acaf38d

The line at the top of this page pins the label git:20260830.9257ef9, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_fk4akhdijsyzpn3e.svg)](https://markdownregistry.com/a/art_fk4akhdijsyzpn3e)

1 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 2 versions of this file, between Jun 21, 2026 and Aug 30, 2026, about one every 70 days.

versioncommittedcommitsizeaudit
git:20260830.9257ef9 latest2026-08-30 9257ef9 1,876 BA view · diff
git:20260621.3a1e3de2026-06-21 3a1e3de 1,892 BA view

Audit of the latest version

A  14 of 14 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.
  • pass: Size between 200 bytes and 200 KB (1876 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

biosymphony/small-molecules · 6 stars · license MIT · pushed 2026-09-25 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_fk4akhdijsyzpn3e
GET https://markdownregistry.com/api/v1/resolve?ref=biosymphony/small-molecules/AGENTS.md
GET https://markdownregistry.com/api/v1/blob/491b50447acaf38d6716c6678abe0127d82429fd745aa4b028826ee81d5fef04

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: how to write a good AGENTS.md · AGENTS.md vs CLAUDE.md · which agent file does what.

More from biosymphony/small-molecules

small-molecule-design-tools SKILL.md skill
biosymphony/small-molecules · SKILL.md · Use when choosing or applying open or publicly documented small-molecule design, synthesis-planning, docking…
git:20260921.dd04c81 · audit A · 6 stars
small-molecule-design-tools SKILL.md skill
biosymphony/small-molecules · skills/small-molecule-design-tools/SKILL.md · Use when choosing or applying open or publicly documented small-molecule design, synthesis-planning, docking…
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