git:20260801.c86e9a8 to git:20260907.0cfcd93

20 added, 74 removed. Audit A to A.

---
name: mathodology-project-orientation
- description: Use when maintaining or checking boundaries of the Mathodology skills repository itself, or deciding whether a change belongs on this branch.
+ description: Use when maintaining the skills-only repository or checking whether a change belongs here.
---
- # Mathodology Project Orientation
-
- ## Repository Contract
-
- This branch is a skills-only GitHub tree. Treat it as an AI-coding knowledge pack, not as the original runnable Mathodology application.
-
- Current work should normally edit only:
-
- - any file under `.claude/skills/<skill-name>/` — its `SKILL.md`,
- `agents/openai.yaml`, and a `scripts/` directory when the skill ships one
- (e.g. `.claude/skills/mathodology-award-gates/**` and
- `.claude/skills/mathodology-dev-test-release/scripts/validate_repo.py`)
- - `.claude/agents/<agent-name>.md` (including `.claude/agents/mathodology-award-judge.md`)
- - `.claude/workflows/<workflow-name>.md`
- - `.claude/skills/mathodology-whole-project/scripts/create-source-backup.sh`
- - `.claude/skills/mathodology-whole-project/scripts/update-project.py`
- - `AGENTS.md`
- - `README.md`
- - `README_en.md`
- - `docs/SKILLS.md`
- - `docs/SKILLS_zh.md`
- - `docs/INSTALL.md`
- - `docs/INSTALL_zh.md`
- - `docs/WORKFLOWS.md`
- - `docs/WORKFLOWS_zh.md`
- - `docs/BACKUP.md`
- - `docs/BACKUP_zh.md`
- - `.gitignore`
- - `.mcp.json`
-
- `.mcp.json` is a deliberate exception to the "no project config" rule: it registers the
- keyless `search` MCP server (`uvx free-search-mcp`) that `mathodology-evidence-search`
- depends on, so a fresh clone has working evidence search with no per-user setup. It must
- stay a client-configuration file — no secrets, no API keys, no local absolute paths. A user
- who wants a different server (a local checkout, a keyed engine set) overrides it at local
- scope, which takes precedence over the project file.
-
- `LICENSE` is retained but should not change unless the license changes.
-
- ## What Is Absent
-
- The current GitHub tree should not contain application source, generated clients, CI, deployment, package-manager, installer, data, or test trees. `.mcp.json` is the one configuration file that is present, and it is whitelisted for the reason given above.
-
- If a task requires historical implementation detail, use Git history or another branch in a separate worktree. Do not add those files back to this branch as part of ordinary skills maintenance.
-
- ## Boundary Check
-
- Before publishing cleanup or skill maintenance, verify tracked files stay inside
- the skills-repository whitelist:
-
- ```bash
- python3 .claude/skills/mathodology-dev-test-release/scripts/validate_repo.py whitelist
- ```
-
- Run `validate_repo.py all` for the full set of maintenance gates (skills,
- metadata, links, whitelist, agents, sync, evidence, updater). The whitelist logic lives only in
- that script; do not re-inline it here.
-
- ## Text Check
+ # Mathodology Repository Orientation
- Search for stale current-path claims before committing (requires ripgrep; the
- `grep -E` fallback is shown second):
+ The maintained source is `.claude/skills/`, with roles in `.claude/agents/`,
+ workflow prompts in `.claude/workflows/`, and user documentation in `docs/`.
+ The root retains AGENTS.md, the two READMEs, LICENSE, .gitignore and .mcp.json.
- ```bash
- rg -n "apps/|crates/|packages/|docs/skills|Dockerfile|docker-compose|just |cargo|pnpm|uv run|\.github|installer" README.md README_en.md AGENTS.md docs .claude/skills
- grep -REn "apps/|crates/|packages/|docs/skills|Dockerfile|docker-compose|just |cargo|pnpm|uv run|\.github|installer" README.md README_en.md AGENTS.md docs .claude/skills
- ```
+ Skill directories may include reference Markdown, attributed source snapshots,
+ small licensed images, generated demonstration figures and optional scripts.
+ A reference figure is teaching material, not contest evidence. Keep synthetic
+ previews visibly labeled and reproducible. Do not add a dataset collection,
+ application runtime, CI, package manifest or deployment framework.
- Hits are acceptable only when they describe removed historical material or an absence check. They must not instruct agents to edit or run missing current files. The current skills, scripts, and award-gate content do not match this pattern, so any hit is a stale claim to review.
+ `.agents/skills/` is an ignored local mirror, never a second authoring source.
+ Before replacing this project's installed skills, back up its Mathodology
+ entries outside the checkout. Leave other skills and global directories alone.
- ## Choosing Skills
+ `.mcp.json` is a client configuration for the keyless search MCP. It is retained;
+ custom user configurations and secrets do not belong in source control.
+ Contest output can live in ignored `work/` or another working directory.
+ Historical application implementation is available through Git history.
- - Whole repository backup, transfer, or orchestration: use `mathodology-whole-project`.
- - Skill text or metadata changes: use `mathodology-skill-authoring`.
- - Award-level Codex or Claude Code phase workflow: use `docs/WORKFLOWS.md`.
- - Award-run gate schemas (handoff/gate/scorecard/decision_memo), judge-panel protocol, and figure/PDF QA scripts: use `mathodology-award-gates`.
- - Former subsystem knowledge: use the matching archived subsystem skill.
- - Validation and publishing checks: use `mathodology-dev-test-release`.
+ For maintenance, optionally run the repository checker described in
+ [maintenance](../mathodology-dev-test-release/SKILL.md). The checker verifies
+ metadata, references and boundaries; it does not assess mathematical quality.