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# Project Instructions Based on the `ai_research_template` project template, last synced YYYY-MM-DD. These rules govern agent work in this project directory, whether the project lives inside the AI-Human Research OS or stands alone as its own repository. If this directory is `projects-folder/templates/<name>/`, it is the template itself: edit it as a template and skip the project rules below. ## Start Read [index.md](index.md) for navigation and the Snapshot in [PROJECT_MEMORY.md](PROJECT_MEMORY.md) for current state; use [Code/README.md](Code/README.md) for setup, commands, and results. ## Workflow - **Code and data:** work under [Code/](Code/), manage its environment with `uv`, and store datasets under [Code/Datasets/](Code/Datasets/) with their source, version, and license. Keep the paired code READMEs current with setup, run commands, inputs, outputs, results, and limitations. - **Artifacts:** place figures and tables in [Figs/](Figs/) and baseline notes or comparison materials in [Baselines/](Baselines/). - **Writing:** edit [paper/main.tex](paper/main.tex), with claims and evidence tracked in [paper_skeleton.md](paper_skeleton.md) and project BibTeX entries in [paper/references.bib](paper/references.bib). Build from `paper/` with `latexmk -pdf -interaction=nonstopmode main.tex`; the expected output is `paper/main.pdf`. - **Evaluation:** store one full report per evaluation under `Evaluations/` when that directory is needed; keep only summary state in `PROJECT_MEMORY.md`. - **Session end:** add a dated bullet to the newest-first Progress Log in `PROJECT_MEMORY.md` and update every Snapshot field the session changed. ## Parallel work Create `Tasks/<task-id>/` only for work that is decomposable, independently verifiable, and worth the merge cost. Record the task goal, inputs, success criteria, findings, and artifacts there; merge only verified outputs into the project's main areas. ## Research integrity - Preserve original datasets, reference material, and user-provided research material; keep frozen evaluators and authoritative result files as they are. - Keep every claim traceable to a source or artifact, and every reported number reproducible from a stated command. Record unknowns as unknown; never invent citations, quotations, data, results, or verification. ## Inside the Research OS When this project sits under `projects-folder/` in the Research OS, the repository root's `AGENTS.md` applies as well, and: - Reusable paper understanding goes to the shared [paper wiki](../../paper-wiki/index.md); project-specific BibTeX stays in `paper/references.bib`. - The project's row in [global memory](../../memory/MEMORY.md) is a projection of the Snapshot: after changing the Snapshot, run `research-project-manager` `sync`. Edit global memory directly only for cross-project changes. - The source idea lives under [ideas/](../../ideas/). ## Project-specific rules <!-- Rules that apply only to this project: hardware, data locations, protected files, scope. Keep the sections above as the template ships them, so later template changes can be ported. -->