CLAUDE.mdA

CLAUDE.md from ziatdinovmax/scilink is a CLAUDE.md file: the standing instructions Claude Code reads in that repo.

Install it, pinned
mdr add ziatdinovmax/scilink/CLAUDE.md@git:20261023.87ddd4a

Pins git:20261023.87ddd4a in mdr.lock. Pin the fingerprint instead.

Audit grade
A, 14 of 14 checks passed
Kind
CLAUDE.md file
Repository
ziatdinovmax/scilink
Path
CLAUDE.md
Versions recorded
33
Latest version
git:20261023.87ddd4a, committed Oct 23, 2026
First version recorded
Jul 27, 2026
Size
111,387 bytes
Repository stars
99
License
none declared

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# SciLink — Architecture Notes

Forward-looking design decisions and conventions. Intended for AI assistants
and contributors working on the agentic stack — orchestrators, foundation
agents, and the skill subsystem. Codebase tour and per-module docs are
elsewhere; this file is about *direction*.

## The mode universe is fixed at three

Every chat-driven orchestrator in SciLink falls into one of three modes —
this is a settled architectural commitment, not a refactoring waypoint:

| Mode | Class | Domain |
|---|---|---|
| `analyze` | `AnalysisOrchestratorAgent` | Experimental data analysis (microscopy, spectroscopy, …) |
| `plan` | `PlanningOrchestratorAgent` | Experimental campaign design |
| `simulate` | `SimulationOrchestratorAgent` | Computational simulation (DFT, classical MD, MLIP-driven MD) |

Anything in scientific workflow falls under one of these three. There will
**not** be a fourth mode. Future capability growth happens *inside* one of
the three, or as a meta-agent on top (see below).

## Capability expansion through skills, not new agents

Going forward, SciLink intends to extend its agentic capabilities primarily through skill
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint
mdr add ziatdinovmax/scilink/CLAUDE.md@sha256:ff72fed33da3121b

The line at the top of this page pins the label git:20261023.87ddd4a, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_urxapz3tttfm2mc4.svg)](https://markdownregistry.com/a/art_urxapz3tttfm2mc4)

2 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 33 versions of this file, between Jul 27, 2026 and Oct 23, 2026, about one every 3 days.

versioncommittedcommitsizeaudit
git:20261023.87ddd4a latest2026-10-23 87ddd4a 111,387 BA view · diff
git:20261008.b2d013c2026-10-08 b2d013c 120,476 BA view · diff
git:20261008.20ab9762026-10-08 20ab976 119,900 BA view · diff
git:20261007.2295d582026-10-07 2295d58 119,575 BA view · diff
git:20261007.4f68ffe2026-10-07 4f68ffe 118,667 BA view · diff
git:20261007.bc059702026-10-07 bc05970 117,335 BA view · diff
git:20261007.ce2516b2026-10-07 ce2516b 114,129 BA view · diff
git:20261007.05329d12026-10-07 05329d1 110,938 BA view · diff
git:20261007.59bc7c52026-10-07 59bc7c5 110,830 BA view · diff
git:20261007.3dee1372026-10-07 3dee137 110,597 BA view · diff
git:20261006.47a3de52026-10-06 47a3de5 109,911 BA view · diff
git:20261004.f2af00b2026-10-04 f2af00b 102,637 BA view · diff
git:20261004.ec603a12026-10-04 ec603a1 102,431 BA view · diff
git:20261004.6854e382026-10-04 6854e38 102,290 BA view · diff
git:20261004.666c74a2026-10-04 666c74a 101,797 BA view · diff
git:20261003.f21e93c2026-10-03 f21e93c 100,310 BA view · diff
git:20261002.4177b012026-10-02 4177b01 89,028 BA view · diff
git:20261001.d0ad8832026-10-01 d0ad883 87,724 BA view · diff
git:20261001.a7663b22026-10-01 a7663b2 87,730 BA view · diff
git:20261001.c2c95f72026-10-01 c2c95f7 85,453 BA view · diff
git:20261001.c188d012026-10-01 c188d01 84,375 BA view · diff
git:20260928.55ab9992026-09-28 55ab999 78,555 BA view · diff
git:20260923.16574b62026-09-23 16574b6 76,145 BA view · diff
git:20260921.226c3c62026-09-21 226c3c6 55,423 BA view · diff
git:20260921.fd9c4612026-09-21 fd9c461 53,802 BA view · diff
git:20260920.49a857c2026-09-20 49a857c 48,143 BA view · diff
git:20260919.7fded642026-09-19 7fded64 46,522 BA view · diff
git:20260913.23f6b782026-09-13 23f6b78 40,002 BA view · diff
git:20260903.22272e62026-09-03 22272e6 38,697 BA view · diff
git:20260903.c5308f32026-09-03 c5308f3 38,370 BA view · diff
git:20260821.4f9c35e2026-08-21 4f9c35e 35,487 BA view · diff
git:20260821.bc197012026-08-21 bc19701 35,564 BA view · diff
git:20260727.f454cdd2026-07-27 f454cdd 35,565 BA view

Audit of the latest version

A  14 of 14 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.
  • pass: Size between 200 bytes and 200 KB (111387 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

ziatdinovmax/scilink · 99 stars · license none declared · pushed 2026-11-05 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_urxapz3tttfm2mc4
GET https://markdownregistry.com/api/v1/resolve?ref=ziatdinovmax/scilink/CLAUDE.md
GET https://markdownregistry.com/api/v1/blob/ff72fed33da3121b26a86b145f5ec93d62ebaa6927ae06f87842fcba2ad231b1

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: what a CLAUDE.md file is · keeping AGENTS.md and CLAUDE.md in sync · which agent file does what.

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