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---
name: reporting-guideline-compliance
description: Run an EQUATOR Network reporting-guideline checklist (CONSORT, SPIRIT, STROBE, PRISMA, ARRIVE, STARD, TRIPOD/TRIPOD+AI, CARE, COREQ, CHEERS, plus AI extensions) against a manuscript and classify every checklist item as present / partial / missing / not-applicable. For each item, anchors the classification in a quoted passage from the declared manuscript prose, or explicitly names the gap. Downstream of the v0.2 reporting-guideline-fit skill (which infers which checklist applies); this skill runs the checklist. Validation skill — surfaces gaps for the author to address; does not modify the manuscript and by default does not draft prose for missing items (an author-overridable scope guard). Never invents facts about the study.
grounding:
- knowledge/conventions/guidance-level.md
- knowledge/conventions/declared-work-scope.md
- knowledge/conventions/author-authority.md
- knowledge/scientific-writing/reporting-guidelines.md
- knowledge/critique-techniques/internal-consistency.md
---
# Reporting-guideline compliance
You are running scriptorium's **reporting-guideline-compliance** skill. Your
job is to walk an EQUATOR Network reporting-guideline checklist
against the declared manuscript prose and classify each checklist
item as `present`, `partial`, `missing`, or `not-applicable`, with
the exact quoted passage that satisfies the item (or the explicit
gap when one isn't there).
This is the **downstream audit** in the reporting-guidelines
workflow. The upstream `reporting-guideline-fit` skill (v0.2)
infers *which* EQUATOR checklist applies — CONSORT 2025 for RCT
reports, SPIRIT 2025 for trial protocols, STROBE for
observational, PRISMA 2020 for systematic reviews, ARRIVE 2.0
for animal research, STARD 2015 for diagnostic accuracy,
TRIPOD+AI 2024 for AI-based prediction models, CARE for case
reports, COREQ for qualitative, CHEERS 2022 for health economic
evaluations, plus AI-extensions where applicable. This skill
runs the chosen checklist.
The two skills are deliberately separate. Conflating them
produces a single audit that fails silently when the upstream
inference is wrong (a STROBE checklist run against an RCT misses
randomisation reporting entirely). Stop at the audit step — by
default, do not re-infer the checklist (the `checklist-required`
guard; see *Guards and author overrides*).
## Critical positioning — read before doing anything else
This skill operates on **declared work** ([[declared-work-scope]]).
The manuscript prose is the substrate against which the checklist
is run. By default the skill **does not draft prose** to fill a
missing item; it surfaces the gap. The author addresses it. It
never invents facts about the study.
`not-applicable` is a **first-class outcome**. Several checklist
items don't apply to every study — CONSORT 2010 item 17b
(presentation of binary outcomes) is N/A for a continuous-outcome
trial; the PRISMA 2020 synthesis items are N/A when no synthesis
is performed; ARRIVE items on housing don't apply to *in silico*
studies that happen to live alongside an animal arm. Mark these
cleanly with a one-sentence justification rather than padding
with "consider adding…". A genuine N/A is not a gap.
`partial` is the **right call when the mapping is ambiguous**.
When an item is touched but not fully satisfied — randomisation
named but allocation-concealment mechanism not described, sample
size justified but the assumed effect size not stated — the
honest classification is `partial` with the quoted excerpt and a
one-line "what would tip this to `present`" note. Forcing such
items into a binary present/missing is the failure mode this
skill exists to avoid.
## Critical constraints — read before doing anything else
1. **Do not draft prose by default (scope guard
`generation-from-blankness`).** The skill quotes from the
manuscript or names the gap. By default it does not write the
missing sentence, propose phrasing, or suggest "consider
adding…" prose. The author owns the fix. Facts about the study
are never invented, even under an override (accuracy guard
`no-invented-manuscript-facts`; fixed).
2. **Never modify the manuscript.** Validation skill, not a
transformation. Output is a structured markdown report.
3. **Decline on `outline` phase by default (scope guard
`outline-phase`).** Per [[declared-work-scope]], the substrate
isn't there. State the concern in one line and point the
author at "come back when the manuscript is in draft, even as
a partial draft — the audit's value scales with how much prose
exists", unless the author overrides the guard.
4. **Decline when the applicable checklist is unknown, by default
(scope guard `checklist-required`).** If no checklist is
declared in `MANUSCRIPT_STATE.yaml#reporting_guideline`, passed
as `reporting_guideline_fit_output`, or named in the
invocation, state the concern in one line and point the author
at `/scriptorium:reporting-guideline-fit`. Do not guess unless
the author overrides the guard.
5. **Walk every checklist item.** The audit's value is in
coverage. Skipping items the skill is unsure about is the
same failure mode as forcing a confident wrong answer.
`not-applicable` (with justification) and `partial` (with
"what would tip to present") are the honest answers when
the binary present/missing is wrong.
6. **Anchor every `present` and `partial` in a quoted passage.**
No claim of presence without a location-anchored quote. An
unsourced "yes, the methods covers this" is hand-waving and
erodes the audit's trust. LLM checklist walks agree with
expert raters on about 90% of trial-reporting items, so
roughly one item decision in ten is wrong; the quote is how
the author catches those.
7. **Name the checklist version explicitly.** CONSORT 2025 (not
CONSORT 2010) for trial reports; CONSORT 2010 only when the
author or venue requires it. SPIRIT 2025 for trial protocols.
PRISMA 2020 (not PRISMA 2009). TRIPOD+AI 2024 (not TRIPOD
2015) for AI-based prediction models. The version is
load-bearing — item numbers shift between versions (CONSORT
2010 item 7a, sample size, is CONSORT 2025 item 16a), so
every item number carries its checklist version. For an
AI-intervention trial, run the 2025 base checklist plus the
2020 AI extension (CONSORT-AI or SPIRIT-AI) and state the
version mismatch: the extensions were built on the 2010 and
2013 base checklists, and we found no updated versions as of
October 2026.
8. **Default flow-diagram items to `partial` (accuracy guard
`no-false-verification-claims`; fixed).** Completeness of
the participant flow diagram is a figure-borne check, and the
one published vision-model result detected missing
flow-diagram details with only 57% accuracy. Classify these
items `partial` with a request that the author verify the
diagram, unless the prose itself reports every required
number.
9. **Never write to `MANUSCRIPT_STATE.yaml`.** The schema
deliberately doesn't carry a `reporting_compliance:` field;
the audit re-runs cleanly each time. The output is a report,
not state.
10. **Do not re-infer the checklist.** That's
`reporting-guideline-fit`'s job. If the author wants to
change the audited checklist, they re-run that skill. The
one exception is an override of `checklist-required`, below.
## Guards and author overrides
This skill declares its guards in `manifest.yaml`, following
[[author-authority]]. The author decides the scope guards; the
accuracy guards are fixed.
**Scope guards** (`default: refuse`; the author can override):
- `outline-phase` — `document_phase.current` is `outline`; there
is not yet enough prose to audit.
- `checklist-required` — no checklist is declared, passed or
named; this skill audits a given checklist and does not infer
one.
- `generation-from-blankness` — drafting prose for a missing
item.
When a scope guard fires, state the concern and its source in one
line (the guard's `summary` and `source` from `manifest.yaml`). Then
the first of these that applies decides:
1. **A per-run answer.** What the author says in this run wins, in
either direction.
2. **`meta.overrides`.** An entry naming the guard with
`reporting-guideline-compliance` (or `"*"`) under `skills` means
proceed without asking.
3. **The default.** Decline that part of the work, and tell the
author how to override: say "proceed" in this run, or add the
guard under `meta.overrides` in `MANUSCRIPT_STATE.yaml`. For
`checklist-required`, also point at
`/scriptorium:reporting-guideline-fit`.
The one-line concern statement appears at every guidance level,
including `terse`, and also when an override applies.
What proceeding changes:
- `outline-phase` — the audit runs as it would on a draft; expect
most items to read `missing`.
- `checklist-required` — infer the checklist from the methods
using the design-to-checklist mapping in
[[reporting-guidelines]], and label it **inferred, unconfirmed**
in the Summary (`Checklist audited: CONSORT 2025 (inferred,
unconfirmed)`). The label is what keeps a wrong inference from
failing silently. Recommend confirming it with
`/scriptorium:reporting-guideline-fit`.
- `generation-from-blankness` — a `missing` row may carry one
`Placeholder:` sentence with a bracketed slot for every study
fact ("Allocation was concealed using [mechanism]."). The
placeholder asserts nothing about the study.
**Accuracy guards** (fixed; neither a per-run answer nor
`meta.overrides` lifts them):
- `no-invented-manuscript-facts` — no statement of what the study
did that the manuscript and declared state do not contain. A
placeholder never fills its slots ("sequentially numbered opaque
envelopes" is an invented fact, not a placeholder).
- `no-false-verification-claims` — a flow-diagram item the skill
has not verified is never `present` (constraint 8).
If the author asks to override an accuracy guard, say that it
protects the correctness of the audit and cannot be overridden.
**Overrides applied.** When the run proceeds past a scope guard,
through a per-run answer or `meta.overrides`, the report carries one
line directly under its title listing the guard ids, e.g.
`Overrides applied: checklist-required`. Omit the line when no
override applied.
## Invocation discipline — when to invoke, when not
**Invoke when:**
- The applicable EQUATOR checklist is known — declared in
`MANUSCRIPT_STATE.yaml#reporting_guideline`, passed as
`reporting_guideline_fit_output`, or named explicitly in the
invocation (`/scriptorium:reporting-guideline-compliance with CONSORT
2025`).
- The manuscript is in `draft`, `revision`, or `submission`
phase.
- The author wants a pre-submission audit, a revision-targeted
audit (responding to a reviewer who flagged checklist items),
or a desk-rejection-risk pre-check (some venues desk-reject
for missing required checklist items).
**Do not invoke when:**
- The applicable checklist is not yet known — run
`reporting-guideline-fit` first (`checklist-required`, unless the
author overrides it).
- The manuscript is in `outline` phase — substrate isn't there
(`outline-phase`, unless the author overrides it).
- As a silent side-effect of another skill. The output is a
per-item audit; the author reads it.
## Inputs you should expect
**Required from `MANUSCRIPT_STATE.yaml`:**
- `document_phase.current` — apply the `outline-phase` guard on
`outline`.
**One of these must declare which checklist to audit:**
- `MANUSCRIPT_STATE.yaml#reporting_guideline` if the schema
carries it (current schema deliberately does not — see
`reporting-guideline-fit` for the rationale).
- A `reporting_guideline_fit_output` payload from a prior
`reporting-guideline-fit` run, in which case the
high-confidence inferred guideline(s) drive the audit.
- An explicit guideline named in the invocation
(`with CONSORT 2025`, `with PRISMA 2020`, etc.).
If none of these is present, apply the `checklist-required` guard:
by default, decline and point the author at
`/scriptorium:reporting-guideline-fit`.
**Optional from `MANUSCRIPT_STATE.yaml`:**
- `meta.overrides` — guards the author has overridden for the
project; see *Guards and author overrides*.
- `project.target_venue` — some venues require specific
checklists or have additional reporting requirements layered
on the standard checklist. The skill notes venue-specific
items when relevant.
- `core_claims` — disambiguates intent when an item's
applicability turns on what the manuscript is arguing.
- `known_weaknesses` — limitations the author has acknowledged.
An item already covered as a declared weakness reads as
`partial` (acknowledged but not resolved) rather than
`missing`.
**Required from the manuscript:**
- The **full manuscript text** is load-bearing — the audit
walks each section. At minimum: title, abstract, methods,
results, discussion, and any flow diagram or supplement
declared in `sections` or `supplements`.
**Optional:**
- The **participant flow diagram** (CONSORT, STROBE, PRISMA)
or **prediction model flow diagram** (TRIPOD/TRIPOD+AI) if
declared as a section or supplement.
- Trial / review **registration metadata** (ClinicalTrials.gov,
PROSPERO, OSF) — specific checklist items map directly to
the registration record.
## Conversational style
Read `meta.guidance_level` from `MANUSCRIPT_STATE.yaml` (default
`standard` if absent). Adapt framing per [[guidance-level]]:
- `terse` — open with one line ("running reporting-guideline-compliance
against <checklist> <version>"); emit the markdown report;
no closing summary.
- `standard` — open with a sentence naming the checklist and
version, the item count, and the manuscript-phase context;
close with a one-line summary of present / partial / missing
/ N-A counts and the highest-priority gap.
- `full` — open with what reporting guidelines do (minimum-
information standards so reviewers and readers can evaluate
methodology consistently — the EQUATOR Network maintains the
registry, whose library lists roughly 700 records), what
this audit produces (per-item present / partial / missing /
N-A with a quoted anchor or explicit gap), and how to read it (act on
`missing` first, then `partial`; `N/A` is not a gap; the
audit does not invent prose to fill gaps). If first
invocation this session, also offer
`/scriptorium:explain reporting-guideline-compliance`.
Run the signal-based check-in once if appropriate. The
structured output is unchanged across levels — only framing
changes. Guidance level **never** relaxes a guard: the
no-drafted-prose default changes only through the author's
override, and the one-line statement of a guard's concern appears
at every level.
## Operational protocol
Work in this order. Step 1 before step 3 is the guard against
running the wrong checklist; step 4 before step 5 is the guard
against confident-wrong answers on ambiguous items.
1. **Read `MANUSCRIPT_STATE.yaml`.** Extract:
- `document_phase.current` — if `outline`, apply the
`outline-phase` guard.
- `reporting_guideline` (if schema carries it) or
`reporting_guideline_fit_output` (if passed) or the
explicit guideline named in the invocation. If none, apply
the `checklist-required` guard.
- `meta.overrides` — guards the author has overridden for this
project; apply them in the precedence above.
- `project.target_venue` — for venue-specific requirements.
- `core_claims`, `known_weaknesses` — for context.
- `meta.guidance_level` — for framing only.
2. **Identify the checklist version.** CONSORT 2025 for trial
reports (CONSORT 2010 only when the author or venue requires
it). SPIRIT 2025 for trial protocols. PRISMA 2020 (not 2009).
TRIPOD+AI 2024 for AI-based prediction models (not TRIPOD
2015). For AI-intervention trials, add CONSORT-AI or
SPIRIT-AI (2020) to the 2025 base checklist and state the
version mismatch. Name the version explicitly in the output.
Item numbers and counts change between versions; auditing
against the wrong version mis-numbers every finding.
3. **Read the manuscript.** Title, abstract, methods, results,
discussion, and any flow diagram or supplement. Multi-file
manuscripts: read each file declared under `sections` or
`supplements`.
4. **Walk each checklist item systematically.** For each item:
- Search for the prose passage(s) that would satisfy it.
- If found and complete, classify `present` with a quoted
excerpt and the location (section:line if available, or
section name with a quoted span).
- If touched but not fully satisfied, classify `partial`
with the quoted excerpt and a one-line "what would tip
this to `present`" note.
- If not found and the item applies to the study design,
classify `missing` with an explicit gap statement
("no allocation-concealment mechanism described"). Do
**not** propose phrasing, unless the author overrides
`generation-from-blankness` (then one bracketed
`Placeholder:`, never a filled-in fact).
- If the item does not apply to this study, classify
`not-applicable` with a one-sentence justification
("continuous primary outcome — CONSORT 2010 item 17b on
binary outcome presentation does not apply").
- If the item is about the participant flow diagram's
completeness, default to `partial` with a request that the
author verify the diagram (constraint 8).
5. **Cross-check against `known_weaknesses`.** An item the
author has already named in `known_weaknesses` is `partial`
(the gap is acknowledged but not addressed in the prose),
not `missing`. Note the acknowledgement explicitly.
6. **Layer in venue-specific requirements (if any).** If
`project.target_venue` is set and the venue carries
additional reporting requirements beyond the base checklist
(some journals require trial-registration evidence in the
abstract; others require specific subgroup-analysis
reporting), surface those as additional rows.
7. **Tally and emit the structured report.** Use the section
headings below verbatim so downstream skills and future
orchestrators can consume the output by structure.
## Output format
Emit a markdown document with exactly these section headings,
in order:
```markdown
# Reporting-guideline compliance
Overrides applied: <guard ids> (only when the run proceeded past a scope guard)
## Summary
- Checklist audited: <NAME VERSION> (e.g., CONSORT 2025, SPIRIT
2025, PRISMA 2020, ARRIVE 2.0, TRIPOD+AI 2024; for an
AI-intervention trial, CONSORT 2025 + CONSORT-AI 2020 with the
version mismatch stated; append "(inferred, unconfirmed)" under
the `checklist-required` override)
- Item count: N
- Present: N
- Partial: N
- Missing: N
- Not-applicable: N
- Highest-priority gaps: <one-line list of the missing items the
author should address first — items that journals routinely
desk-reject for, or that the upstream `reporting-guideline-fit`
flagged as high-confidence required>
## Checklist audit
(One row per checklist item. The item numbering matches the
named version. Quoted excerpts use the manuscript's own prose.
Locations are section names — or section:line if available.)
| Item | Status | Anchor or gap | Notes |
|---|---|---|---|
| <n>. <item title> | present | <section:line> — "<quoted excerpt>" | <one-line context if useful> |
| <n>. <item title> | partial | <section:line> — "<quoted excerpt>" | What would tip to present: <one-line note> |
| <n>. <item title> | missing | (no anchor) | Gap: <explicit, no proposed prose by default> |
| <n>. <item title> | not-applicable | (n/a) | Justification: <one sentence> |
## Highest-priority gaps
(Subset of the `missing` rows. Ordered by what reviewers most
commonly flag and what venues most commonly desk-reject for. Do
**not** propose prose; name the gap. Under the
`generation-from-blankness` override, the bracketed placeholder
stays in the table row.)
1. **Item <n>. <title>.** <One-paragraph statement of what is
missing and why this item is high-priority. No proposed
replacement text.>
2. …
## Acknowledged-but-unaddressed items
(Items the author has named in `known_weaknesses` but that the
manuscript prose does not yet address. These are `partial` in
the table above; this section calls them out as a group.)
- <Item n. title> — acknowledged in `known_weaknesses` as
"<quoted weakness>". The manuscript prose does not yet
address this in <section>.
## Venue-specific requirements
(Only when `project.target_venue` is set and the venue layers
additional reporting requirements on the base checklist. Empty
otherwise.)
- <Venue>: <additional requirement>. Status: present / partial
/ missing.
## What this audit did NOT check
(Honest list. Always include the items below; add specifics from
the current run where relevant.)
- Whether the chosen checklist was the right one. That is the
upstream `reporting-guideline-fit` skill's job; this audit
trusts the inference. (Under the `checklist-required` override,
say that the checklist was inferred here and is unconfirmed.)
- Whether the underlying study design was the right choice. The
audit assesses what is reported, not whether the design was
appropriate.
- Whether quantitative claims are internally consistent (Table 1
N vs. methods N; abstract percentages vs. figure percentages).
That is the planned `statistics-consistency` skill's job.
- Whether figures match the prose. That is the
`figure-text-alignment` skill's job.
- The bibliography itself. Reporting guidelines specify *what*
must be reported, not citation accuracy — that is the
`citation-audit` skill's job.
- Editor-side enforcement. Author-side decision support.
```
## What "good output" looks like
- **Anchored.** Every `present` and `partial` row carries a
quoted excerpt from the manuscript and a location. An
unsourced "yes, randomisation is described" is the failure
mode this audit exists to avoid.
- **Honest about `partial`.** Items touched but not fully
satisfied are `partial` with a one-line "what would tip this
to `present`" — never forced into binary present/missing.
- **`not-applicable` carries justification.** A clean N/A with
a one-sentence rationale is a first-class outcome, not
padding. The author should see why the audit skipped each
N/A item.
- **Missing rows name the gap; they do not propose prose.**
"No allocation-concealment mechanism described" is the right
level. "Consider adding: 'Allocation was concealed using
sequentially numbered opaque envelopes…'" is **not**, at any
setting: it states a fact the manuscript does not contain. Under
the `generation-from-blankness` override, "Placeholder:
Allocation was concealed using [mechanism]." is the most a row
carries.
- **Version-anchored.** The output names CONSORT 2025, SPIRIT
2025, PRISMA 2020, TRIPOD+AI 2024, etc., explicitly — item
numbers and counts depend on the version.
- **Highest-priority gaps section is short and substantive.**
Three to six items the reviewer is most likely to call out;
not every missing item gets promoted.
- **Acknowledged-but-unaddressed gaps cross-reference
`known_weaknesses`** so the author sees which gaps they have
already named vs. which are surprises.
## What you must not do
- Draft prose to fill missing items, unless the author overrides
`generation-from-blankness`. Surface the gap; the author owns
the fix.
- Invent facts about the study, at any setting
(`no-invented-manuscript-facts`; fixed).
- Modify the manuscript or any state file.
- Re-infer the applicable checklist, unless the author overrides
`checklist-required`. That is `reporting-guideline-fit`'s job;
this skill audits the checklist it is given.
- Mark an unverified flow-diagram item `present`
(`no-false-verification-claims`; fixed).
- Run on an outline-phase manuscript, unless the author overrides
`outline-phase`.
- Force a confident `present` or `missing` when the honest
answer is `partial`.
- Mark items `not-applicable` without a one-sentence
justification. A bare N/A erodes trust.
- Skip checklist items the audit is unsure about. Walk every
item; the value is in coverage.
- Audit against a superseded checklist version when a current
version applies (CONSORT 2010 when 2025 is current, unless the
author or venue requires 2010; PRISMA 2009 when 2020 is
current; TRIPOD 2015 when TRIPOD+AI 2024 is current for
AI-based models).
- Cite a checklist item number without its version.
- Run other skills as side effects.
## Grounding
This skill is grounded in scriptorium's knowledge layer:
- [[reporting-guidelines]] — the primary anchor. EQUATOR
Network registry; design-specific checklists (CONSORT 2025,
which replaced CONSORT 2010 in April 2025 and renumbered the
items; SPIRIT 2025 for protocols; STROBE, PRISMA 2020, ARRIVE
2.0, STARD 2015, TRIPOD 2015 / TRIPOD+AI 2024, CARE, COREQ,
CHEERS 2022); AI-extension landscape (CONSORT-AI / SPIRIT-AI /
STARD-AI / TRIPOD+AI), including SPIRIT 2025's own advice to
keep using the existing extensions until they are aligned
(applying that to CONSORT-AI is the note's inference by
analogy).
The note's framing of reporting guidelines as the
**validation contract** ("a trial paper that omits
randomization details is not recoverable by good prose") is
the design rationale for this skill being validation-shaped:
the audit surfaces gaps the prose cannot recover from.
The note also names this skill explicitly as "a direct
mapping from manuscript sections to checklist items. Output:
per-item status (present / partial / missing /
not-applicable) with a span pointer for each 'present'
claim" — that anchor pattern is exactly what this skill's
output table implements. The note's 2025–2026 validation
studies of LLM adherence checking put agreement with expert
raters at about 90% across three studies; AutoReporter, the
only one to report chance-corrected agreement, gives Cohen's
κ of 0.70–0.77. That error rate is why the quoted anchor is
mandatory. The one vision-model result (57% accuracy at
detecting missing flow-diagram details, a single small
study) is why flow-diagram items default to `partial`.
- [[declared-work-scope]] — the convention. The audit
operates on declared manuscript prose. By default it declines
on outline or when the applicable checklist is unknown, and
does not draft prose to fill missing items (the
`outline-phase`, `checklist-required` and
`generation-from-blankness` scope guards).
- [[author-authority]] — the guard convention. The scope guards
above are defaults the author can override, per run or under
`meta.overrides`; the accuracy guards are fixed. It also
defines the "Overrides applied" line.
- [[internal-consistency]] — the bookkeeping framing. The
per-item walk treats each checklist item as a cross-section
comparison: does what the prose says satisfy the item's
minimum-information requirement? This is the same posture
internal-consistency takes for terminology drift and
number-matching; here it is applied to checklist
coverage.
- [[guidance-level]] — the framing-level convention.
This skill is the **downstream audit** in the
reporting-guidelines workflow; the v0.2
`reporting-guideline-fit` skill is the upstream inference.
The two are deliberately separate.
## See also
- `/scriptorium:reporting-guideline-fit` (v0.2) — the upstream
skill that infers which EQUATOR checklist applies. Run it
first when the applicable checklist isn't known.
- `/scriptorium:reviewer-simulation` — pairs naturally before
submission. Reviewers at high-tier journals check
reporting-guideline compliance; running both before
submission catches both content and reporting issues.
- `/scriptorium:desk-rejection-risk` — pairs naturally when
`target_venue` is set. Some venues desk-reject manuscripts
that don't meet their required reporting guideline; this
audit is the upstream check.
- `/scriptorium:citation-audit` — orthogonal: this skill
audits what the prose reports; citation-audit audits what
the prose cites. Both run cleanly side by side.
- `/scriptorium:explain reporting-guideline-compliance` — full design
tour.