genmol-nim SKILL.md skillA

genmol-nim from nvidia/skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned
mdr add nvidia/skills/genmol-nim@git:20260930.79f1873

Pins git:20260930.79f1873 in mdr.lock. Pin the fingerprint instead.

Audit grade
A, 17 of 17 checks passed
Kind
SKILL.md skill
Repository
nvidia/skills
Path
skills/bionemo-genmol-nim/SKILL.md
Versions recorded
2
Latest version
git:20260930.79f1873, committed Sep 30, 2026
First version recorded
Sep 30, 2026
Size
5,431 bytes
Repository stars
3,871
License
Apache-2.0

Generate novel drug-like molecules using the GenMol NIM microservice. Use for de novo generation, scaffold decoration, motif extension, lead optimization, SAFE notation, QED or LogP ranking, hosted NVIDIA API calls, or local Docker deployment. GenMol takes SAFE notation in the smiles field, not ordinary SMILES.

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# GenMol NIM

Generate drug-like molecules with GenMol. Use this guide for first-pass
hosted and local usage; load supplemental files only when needed:

- `references/api.md`: endpoints, schema, Docker flags, response fields.
- `references/science.md`: use cases, strengths, limits, and handoffs.
- `references/parameters.md`: SAFE patterns and tuning effects.
- `references/validation.md`: chemical and artifact checks.
- `references/examples.md`: compact request patterns.

## Choose Mode

Ask only when context is unclear:

> Hosted NVIDIA API or local Docker NIM?

- Hosted: `https://health.api.nvidia.com/v1/biology/nvidia/genmol/generate`
- Local: `http://localhost:8000/generate`

Hosted requests use `Authorization: Bearer $NGC_API_KEY`. For local Docker,
authenticate image pulls with `docker login nvcr.io` using `NGC_API_KEY`
(or `NVIDIA_API_KEY` via the preflight). Pass `-e NGC_API_KEY` into the
container for entitlement checks and first-run model downloads. Local inference
requests use no auth header after readiness, so bind the published port to
loopback with `-p 127.0.0.1:8000:8000`. Warm-cache key-free startup varies by
image version and should not be assumed.

## Local Docker
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint
mdr add nvidia/skills/genmol-nim@sha256:4da71f09abb52e5b

The line at the top of this page pins the label git:20260930.79f1873, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_2hmn2splk4dx5pu3.svg)](https://markdownregistry.com/a/art_2hmn2splk4dx5pu3)

2 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 2 versions of this file, all committed on Sep 30, 2026.

versioncommittedcommitsizeaudit
git:20260930.79f1873 latest2026-09-30 79f1873 5,431 BA view · diff
git:20260930.7a90aad2026-09-30 7a90aad 4,929 BA view

Audit of the latest version

A  17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (5431 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

nvidia/skills · 3,871 stars · license Apache-2.0 · pushed 2026-11-05 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_2hmn2splk4dx5pu3
GET https://markdownregistry.com/api/v1/resolve?ref=nvidia/skills/genmol-nim
GET https://markdownregistry.com/api/v1/blob/4da71f09abb52e5be48ede362322b060333d5a85cd039aa143169a948a33aee6

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.

More from nvidia/skills

nvidia-skill-finder SKILL.md skill
nvidia/skills · plugins/nvidia-skills/skills/nvidia-skill-finder/SKILL.md · Use for NVIDIA-related requests where an NVIDIA skill might help, even if the user did not ask for a skill. Trigger on…
git:20261001.4aa3fd2 · audit A · 3,871 stars
accelerated-computing-cudf SKILL.md skill
nvidia/skills · skills/accelerated-computing-cudf/SKILL.md · Official NVIDIA-authored guidance for NVIDIA cuDF GPU DataFrames, pandas acceleration, dask-cuDF, ETL, joins, groupby…
git:20261015.7efb297 · audit A · 3,871 stars
aiq-deploy SKILL.md skill
nvidia/skills · skills/aiq-deploy/SKILL.md · Use when asked to install, deploy, run, validate, troubleshoot, or stop NVIDIA AI-Q Blueprint infrastructure.
v2.1.0 · audit A · 3,871 stars
aiq-research SKILL.md skill
nvidia/skills · skills/aiq-research/SKILL.md · Use when asked to run deep research or AI-Q research through a reachable NVIDIA AI-Q Blueprint backend.
v2.1.0 · audit A · 3,871 stars
ambient-healthcare-agent-with-nemotron-voice-agent SKILL.md skill
nvidia/skills · skills/ambient-healthcare-agent-with-nemotron-voice-agent/SKILL.md · Customize NVIDIA Nemotron Voice Agent's Generic Pipecat example for healthcare appointment, five-field patient intake…
v1.0.0 · audit B · 3,871 stars
amc-run-rtsp-calibration SKILL.md skill
nvidia/skills · skills/amc-run-rtsp-calibration/SKILL.md · Calibrate a new dataset from live RTSP camera streams via the AutoMagicCalib REST API. Use when the user provides RTSP…
v1.0.0 · audit B · 3,871 stars
amc-run-sample-calibration SKILL.md skill
nvidia/skills · skills/amc-run-sample-calibration/SKILL.md · Run end-to-end calibration on the shipped sample dataset (sdg_08_2_sample_data_010926.zip) against a running AMC…
v1.0.0 · audit A · 3,871 stars
amc-run-video-calibration SKILL.md skill
nvidia/skills · skills/amc-run-video-calibration/SKILL.md · Calibrates pre-recorded `cam_*.mp4` datasets through the AutoMagicCalib REST API. Use for user-supplied local MP4s…
v1.0.0 · audit A · 3,871 stars
amc-setup-calibration-stack SKILL.md skill
nvidia/skills · skills/amc-setup-calibration-stack/SKILL.md · Launch AutoMagicCalib microservice and web UI from NGC release images via Docker Compose. Use when user says 'deploy…
v1.0.0 · audit A · 3,871 stars
boltz2-nim SKILL.md skill
nvidia/skills · skills/bionemo-boltz2-nim/SKILL.md · Use Boltz2 NIM for biomolecular structure prediction and binding affinity. Invoke for Boltz2, protein structures…
git:20261002.85ad857 · audit A · 3,871 stars
codonfm-embed SKILL.md skill
nvidia/skills · skills/bionemo-codonfm-embed/SKILL.md · Validate coding-sequence CSVs, extract public CodonFM/Encodon embeddings, and choose checkpoints for downstream…
git:20261009.329cfc6 · audit A · 3,871 stars
codonfm-finetune SKILL.md skill
nvidia/skills · skills/bionemo-codonfm-finetune/SKILL.md · Fine-tune public CodonFM Encodon checkpoints on labeled coding-sequence or coding-variant data using LoRA, head-only…
git:20261009.329cfc6 · audit A · 3,871 stars

Every file in nvidia/skills

Other files named genmol-nim

genmol-nim SKILL.md skill
nvidia-bionemo/bionemo-agent-toolkit · skills/bionemo-agent-toolkit/skills/genmol-nim/SKILL.md · Generate novel drug-like molecules using the GenMol NIM microservice. Use for de novo generation, scaffold decoration…
git:20260930.59b46bd · audit A · 503 stars
genmol-nim SKILL.md skill
nvidia-bionemo/bionemo-agent-toolkit · nim-skills/genmol-nim/SKILL.md · Generate novel drug-like molecules using the GenMol NIM microservice. Use for de novo generation, scaffold decoration…
git:20260930.59b46bd · audit A · 503 stars

Browse by kind, by grade A, or by owner.