notebooks SKILL.md skillA
notebooks from fmschulz/omics-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add fmschulz/omics-skills/notebooks@git:20261001.06f977aPins git:20261001.06f977a in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- fmschulz/omics-skills
- Path
skills/notebooks/SKILL.md- Versions recorded
- 6
- Latest version
- git:20261001.06f977a, committed Oct 1, 2026
- First version recorded
- Jun 3, 2026
- Size
- 14,448 bytes
- Repository stars
- 11
- License
- MIT
Author, run and convert marimo or Jupyter notebooks. Use when delivering an analysis notebook executed end to end with figures embedded.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Notebooks A single skill for authoring, validating, and delivering reproducible analysis notebooks. Marimo is the default format; Jupyter is supported for existing `.ipynb` files and when a downstream tool requires JSON. Conversion between the two formats is part of this skill. A notebook is not "done" until it has been executed end-to-end on a fresh kernel and every figure is embedded in the delivered file. ## Instructions 1. **Pick the format.** - New notebook: write a marimo `.py` notebook. Use the canonical cell layout (one concept per cell, final expression renders, no `if` guards around outputs, no `try/except` for control flow). - Existing `.ipynb` to extend or polish: keep it as Jupyter unless the user asks to convert. - Conversion: see "Convert between marimo and Jupyter" below. 2. **Outline before coding.** Write the notebook plan (purpose, data sources, analysis steps, expected outputs/plots) as the first markdown cell, then implement against that plan. 3. **Keep marimo cells clean.** These are hard rules for every `.py` notebook: …
Read the whole file at its exact version.
How to install
mdr add fmschulz/omics-skills/notebooks@sha256:5e9cd8269c328dceThe line at the top of this page pins the label git:20261001.06f977a, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_2pxv366fwxlttvyq)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 6 versions of this file, between Jun 3, 2026 and Oct 1, 2026, about one every 24 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20261001.06f977a latest | 2026-10-01 | 06f977a | 14,448 B | A | view · diff |
| git:20260807.4acaed9 | 2026-08-07 | 4acaed9 | 14,370 B | A | view · diff |
| git:20260712.3675171 | 2026-07-12 | 3675171 | 14,110 B | A | view · diff |
| git:20260711.5ae6f6f | 2026-07-11 | 5ae6f6f | 13,544 B | A | view · diff |
| git:20260629.e472910 | 2026-06-29 | e472910 | 13,027 B | A | view · diff |
| git:20260603.e5983f6 | 2026-06-03 | e5983f6 | 12,771 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (14448 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
fmschulz/omics-skills · 11 stars · license MIT · pushed 2026-10-02 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_2pxv366fwxlttvyq GET https://markdownregistry.com/api/v1/resolve?ref=fmschulz/omics-skills/notebooks GET https://markdownregistry.com/api/v1/blob/5e9cd8269c328dcea5ce146756dfb4bbd2fa832cb9b53538475efe54b05c2992
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.