polars-dovmed SKILL.md skillA
polars-dovmed from fmschulz/omics-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add fmschulz/omics-skills/polars-dovmed@git:20261001.bf5afd6Pins git:20261001.bf5afd6 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- fmschulz/omics-skills
- Path
skills/polars-dovmed/SKILL.md- Versions recorded
- 7
- Latest version
- git:20261001.bf5afd6, committed Oct 1, 2026
- First version recorded
- Jun 2, 2026
- Size
- 9,602 bytes
- Repository stars
- 11
- License
- MIT
Run structured full-text searches of PMC Open Access and bioRxiv with polars-dovmed. Use for reproducible literature searches through the hosted API or local parquet corpora.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# polars-dovmed Search the PubMed Central Open Access and bioRxiv corpora with `polars-dovmed`, through the hosted API or local parquet files. `SKILL_DIR` is the directory that contains this `SKILL.md`, installed at `~/.agents/skills/polars-dovmed`. Run the helper as `uv run --script "$SKILL_DIR/scripts/query_literature.py"` so its pinned dependency is available. The helper loads `~/.config/polars-dovmed/.env`. ## Access - Hosted API: needs `POLARS_DOVMED_API_KEY` in the environment or in the `.env` file. Never pass the key in argv, and never write it to run directories, memory records, summaries, or answers. The API root (`https://api.newlineages.com/`) states that keys are issued by the admin only. - Local corpora: upstream `dovmed download`, `dovmed build-parquet`, and `dovmed scan` from <https://github.com/UriNeri/polars-dovmed>. `omics-skills` ships neither an API key nor the corpora. - With neither, state that `polars-dovmed` is not configured and use another literature skill. ## Instructions …
Read the whole file at its exact version.
How to install
mdr add fmschulz/omics-skills/polars-dovmed@sha256:cf0a0b8c4b0334ecThe line at the top of this page pins the label git:20261001.bf5afd6, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_36sjg5egt7owktpx)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 7 versions of this file, between Jun 2, 2026 and Oct 1, 2026, about one every 20 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20261001.bf5afd6 latest | 2026-10-01 | bf5afd6 | 9,602 B | A | view · diff |
| git:20260928.56c5fdf | 2026-09-28 | 56c5fdf | 18,467 B | A | view · diff |
| git:20260825.bd47e68 | 2026-08-25 | bd47e68 | 18,473 B | A | view · diff |
| git:20260712.3675171 | 2026-07-12 | 3675171 | 18,484 B | A | view · diff |
| git:20260711.5ae6f6f | 2026-07-11 | 5ae6f6f | 18,266 B | A | view · diff |
| git:20260605.cdd10ee | 2026-06-05 | cdd10ee | 18,281 B | A | view · diff |
| git:20260602.25de396 | 2026-06-02 | 25de396 | 17,485 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (9602 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
fmschulz/omics-skills · 11 stars · license MIT · pushed 2026-10-02 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_36sjg5egt7owktpx GET https://markdownregistry.com/api/v1/resolve?ref=fmschulz/omics-skills/polars-dovmed GET https://markdownregistry.com/api/v1/blob/cf0a0b8c4b0334ec4108b070350b3e63e063eca155b1fe0ac2ac6b6ca8f98b53
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.