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otuformer-workflow SKILL.md skillA

otuformer-workflow from xtmtd/otu-former is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned

mdr add xtmtd/otu-former/otuformer-workflow@git:20261001.ed42984

Pins git:20261001.ed42984 in mdr.lock. Pin the fingerprint instead.

Audit grade: A, 17 of 17 checks passed
Kind: SKILL.md skill
Repository: xtmtd/otu-former
Path: skills/otuformer-workflow/SKILL.md
Versions recorded: 1
Latest version: git:20261001.ed42984, committed Oct 1, 2026
Size: 5,598 bytes
Repository stars: 14
License: a license file GitHub does not identify

Guide an OTU-Former (image-based morphological OTU delineation) analysis from chat: environment check, self-supervised pre-training, fine-tuning, embedding extraction, clustering, annotation, diversity, CAM and ONNX export. Use for English or Chinese requests such as "run OTU-Former", "train the model", "extract embeddings", "cluster the embeddings", "annotate the partition", "compute diversity", "teach me with the example images", "why did my run fail", 或 "用 OTU-Former 做形态学 OTU 划分…

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# OTU-Former workflow

Help a user advance an OTU-Former analysis through conversation, one approved
step at a time. Never run an analysis because this Skill was loaded.

## Non-negotiable rules

1. **Fresh runtime schema first.** Before proposing any step, read the installed
   CLI through the adapter:
   `python <this-skill-dir>/scripts/export_cli_schema.py --command <name>`.
   Never rely on remembered flags, defaults, or message history.
2. **Show every parameter, then ask.** Present the complete card produced from
   that schema (all parameters, aliases, help, declared default, proposed value,
   provenance, restriction source, unresolved conditions) and the exact proposed
   command. Ask for approval or changes.
3. **Approval is per step.** Approval covers only the displayed command, inputs,
   output directory, and environment. Any change needs a new card and a new
   approval. `--overwrite` needs its own approval naming the resolved directory.
4. **One step, then summarize and recommend.** Run the approved command, inspect
   exit status, logs, and real artifacts, then report a short summary and one
   clear recommendation before moving on (see "After each step" below).
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint

mdr add xtmtd/otu-former/otuformer-workflow@sha256:30a338e853d131bd

The line at the top of this page pins the label git:20261001.ed42984, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

[![mdr](https://markdownregistry.com/badge/art_3iygtpkcdl2aroee.svg)](https://markdownregistry.com/a/art_3iygtpkcdl2aroee)

1 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 1 version of this file, committed on Oct 1, 2026.

version	committed	commit	size	audit
git:20261001.ed42984 latest	2026-10-01	ed42984	5,598 B	A	view

Audit of the latest version

A 17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.

pass: Frontmatter block present
pass: Frontmatter declares a name
pass: Frontmatter declares a description
pass: Size between 200 bytes and 200 KB (5598 bytes)
pass: No zero-width or bidi control characters
pass: No instruction hidden inside an HTML comment
pass: No link to an exfiltration or paste host
pass: No credential-shaped string
pass: No instruction to send local credentials anywhere
pass: No text hidden with inline styles
pass: No prompt-injection phrasing
pass: No curl or wget piped into a shell
pass: No recursive delete of root, home or parent
pass: No instruction to read or print local credentials
pass: No base64 blob over 200 characters
pass: No link to a raw IP address
pass: No script tag

Source

GitHub

xtmtd/otu-former · 14 stars · license a license file GitHub does not identify · pushed 2026-11-06 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_3iygtpkcdl2aroee
GET https://markdownregistry.com/api/v1/resolve?ref=xtmtd/otu-former/otuformer-workflow
GET https://markdownregistry.com/api/v1/blob/30a338e853d131bd89c92c63b165d2ac5b33caa0320011b353e6c36612d4301a

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.

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