Home / fmschulz / omics-skills · GitHub

exploratory-data-analysis SKILL.md skillA

exploratory-data-analysis from fmschulz/omics-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned

mdr add fmschulz/omics-skills/exploratory-data-analysis@git:20261001.bf5afd6

Pins git:20261001.bf5afd6 in mdr.lock. Pin the fingerprint instead.

Audit grade: A, 17 of 17 checks passed
Kind: SKILL.md skill
Repository: fmschulz/omics-skills
Path: skills/exploratory-data-analysis/SKILL.md
Versions recorded: 5
Latest version: git:20261001.bf5afd6, committed Oct 1, 2026
First version recorded: May 26, 2026
Size: 11,860 bytes
Repository stars: 11
License: MIT

Inspect a scientific data file and report its structure and quality. Use when triaging an unknown table, array, sequence or image file.

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# Exploratory Data Analysis

## Overview

Inspect scientific files before downstream analysis. The bundled script recognizes more than 100 simple and compound suffixes and writes a bounded Markdown report. It performs content-level analysis only for the common formats listed below; other recognized formats receive file metadata and a reference-catalog entry.

The six reference files contain 239 format entries. Some entries describe the same suffix in different domain contexts, so this is not a count of unique formats or implemented parsers.

**Bundled content parsers:**
- NumPy arrays (`.npy`, `.npz`), CSV/TSV samples, JSON, and HDF5
- FASTA and FASTQ, including common gzip-compressed suffixes
- TIFF/OME-TIFF, PNG, and JPEG raster images
- Reference-only metadata for every other recognized suffix
- Representative streaming analyzers for PDB/SDF/SMILES, MGF/mzML/mzXML, and mzTab families; proprietary binary formats remain reference-only unless their project environment supplies a reader.

## Quick Reference

| Task | Action |
|------|--------|
| Unknown file | Detect extension and load the matching reference file before analyzing content. |
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint

mdr add fmschulz/omics-skills/exploratory-data-analysis@sha256:940d6a482aadcd81

The line at the top of this page pins the label git:20261001.bf5afd6, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

[![mdr](https://markdownregistry.com/badge/art_5hqwztq525zz4xlq.svg)](https://markdownregistry.com/a/art_5hqwztq525zz4xlq)

4 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 5 versions of this file, between May 26, 2026 and Oct 1, 2026, about one every 32 days.

version	committed	commit	size	audit
git:20261001.bf5afd6 latest	2026-10-01	bf5afd6	11,860 B	A	view · diff
git:20260807.4acaed9	2026-08-07	4acaed9	11,947 B	A	view · diff
git:20260712.3675171	2026-07-12	3675171	16,826 B	A	view · diff
git:20260711.5ae6f6f	2026-07-11	5ae6f6f	16,450 B	A	view · diff
git:20260526.498d7f1	2026-05-26	498d7f1	15,969 B	A	view

Audit of the latest version

A 17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.

pass: Frontmatter block present
pass: Frontmatter declares a name
pass: Frontmatter declares a description
pass: Size between 200 bytes and 200 KB (11860 bytes)
pass: No zero-width or bidi control characters
pass: No instruction hidden inside an HTML comment
pass: No link to an exfiltration or paste host
pass: No credential-shaped string
pass: No instruction to send local credentials anywhere
pass: No text hidden with inline styles
pass: No prompt-injection phrasing
pass: No curl or wget piped into a shell
pass: No recursive delete of root, home or parent
pass: No instruction to read or print local credentials
pass: No base64 blob over 200 characters
pass: No link to a raw IP address
pass: No script tag

Source

GitHub

fmschulz/omics-skills · 11 stars · license MIT · pushed 2026-10-02 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_5hqwztq525zz4xlq
GET https://markdownregistry.com/api/v1/resolve?ref=fmschulz/omics-skills/exploratory-data-analysis
GET https://markdownregistry.com/api/v1/blob/940d6a482aadcd812e8d2d857ec292d789e970ef8f762f8b7684810cc03a945d

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.

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