scanpy SKILL.md skillA
scanpy from foryourhealth111-pixel/vibe-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add foryourhealth111-pixel/vibe-skills/scanpy@git:20260430.784fe8bPins git:20260430.784fe8b in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- foryourhealth111-pixel/vibe-skills
- Path
bundled/skills/scanpy/SKILL.md- Versions recorded
- 2
- Latest version
- git:20260430.784fe8b, committed Apr 30, 2026
- First version recorded
- Feb 26, 2026
- Size
- 11,634 bytes
- Repository stars
- 3,805
- License
- Apache-2.0
Single-cell RNA-seq and retained scverse workflow owner. Load .h5ad/10X data, manage AnnData metadata, plan scVI/scANVI batch-correction workflows, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Scanpy: Single-Cell Analysis ## Overview Scanpy is a scalable Python toolkit for analyzing single-cell RNA-seq data, built on AnnData. Apply this skill for complete single-cell workflows including quality control, normalization, dimensionality reduction, clustering, marker gene identification, visualization, and trajectory analysis. In the bundled Vibe-Skills routing surface, this skill also absorbs the former AnnData and scVI/scANVI route surfaces. Use it for h5ad container handling and scverse latent-model planning when those tasks appear inside a single-cell workflow. ## When to Use This Skill This skill should be used when: - Analyzing single-cell RNA-seq data (.h5ad, 10X, CSV formats) - Performing quality control on scRNA-seq datasets - Creating UMAP, t-SNE, or PCA visualizations - Identifying cell clusters and finding marker genes - Annotating cell types based on gene expression - Conducting trajectory inference or pseudotime analysis - Generating publication-quality single-cell plots - Reading, writing, subsetting, or annotating AnnData/h5ad objects as part of single-cell work - Planning scVI/scANVI batch-correction, latent-model, or cell-type annotation workflows …
Read the whole file at its exact version.
How to install
mdr add foryourhealth111-pixel/vibe-skills/scanpy@sha256:df4d1924c6f284b2The line at the top of this page pins the label git:20260430.784fe8b, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_5ul563stkqeqctpx)
1 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 2 versions of this file, between Feb 26, 2026 and Apr 30, 2026, about one every 63 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260430.784fe8b latest | 2026-04-30 | 784fe8b | 11,634 B | A | view · diff |
| git:20260226.1632f40 | 2026-02-26 | 1632f40 | 11,109 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (11634 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
foryourhealth111-pixel/vibe-skills · 3,805 stars · license Apache-2.0 · pushed 2026-11-07 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_5ul563stkqeqctpx GET https://markdownregistry.com/api/v1/resolve?ref=foryourhealth111-pixel/vibe-skills/scanpy GET https://markdownregistry.com/api/v1/blob/df4d1924c6f284b25a03874f11b38ea6dddfde921107cc37d6ca22d886306832
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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