geo-database SKILL.md skillA
geo-database from foryourhealth111-pixel/vibe-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add foryourhealth111-pixel/vibe-skills/geo-database@git:20260303.491ea97Pins git:20260303.491ea97 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- foryourhealth111-pixel/vibe-skills
- Path
bundled/skills/geo-database/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260303.491ea97, committed Mar 3, 2026
- Size
- 24,528 bytes
- Repository stars
- 3,805
- License
- Apache-2.0
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# GEO Database ## Overview The Gene Expression Omnibus (GEO) is NCBI's public repository for high-throughput gene expression and functional genomics data. GEO contains over 264,000 studies with more than 8 million samples from both array-based and sequence-based experiments. ## When to Use This Skill This skill should be used when searching for gene expression datasets, retrieving experimental data, downloading raw and processed files, querying expression profiles, or integrating GEO data into computational analysis workflows. ## Core Capabilities ### 1. Understanding GEO Data Organization GEO organizes data hierarchically using different accession types: **Series (GSE):** A complete experiment with a set of related samples - Example: GSE123456 - Contains experimental design, samples, and overall study information - Largest organizational unit in GEO - Current count: 264,928+ series **Sample (GSM):** A single experimental sample or biological replicate - Example: GSM987654 - Contains individual sample data, protocols, and metadata - Linked to platforms and series - Current count: 8,068,632+ samples **Platform (GPL):** The microarray or sequencing platform used …
Read the whole file at its exact version.
How to install
mdr add foryourhealth111-pixel/vibe-skills/geo-database@sha256:f53adf210703c5a3The line at the top of this page pins the label git:20260303.491ea97, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_6qmaxgdrwqrmakc5)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Mar 3, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (24528 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
foryourhealth111-pixel/vibe-skills · 3,805 stars · license Apache-2.0 · pushed 2026-11-07 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_6qmaxgdrwqrmakc5 GET https://markdownregistry.com/api/v1/resolve?ref=foryourhealth111-pixel/vibe-skills/geo-database GET https://markdownregistry.com/api/v1/blob/f53adf210703c5a3856b1051fa4e03d034f60e7d2413df3fcdeefc5017e75fe9
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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