AGENTS.mdA

AGENTS.md from jaechang-hits/sciagent-skills is an AGENTS.md file: the standing instructions coding agents read in that repo.

Install it, pinned
mdr add jaechang-hits/sciagent-skills/AGENTS.md@git:20260929.35fe6e3

Pins git:20260929.35fe6e3 in mdr.lock. Pin the fingerprint instead.

Audit grade
A, 14 of 14 checks passed
Kind
AGENTS.md file
Repository
jaechang-hits/sciagent-skills
Path
AGENTS.md
Versions recorded
2
Latest version
git:20260929.35fe6e3, committed Sep 29, 2026
First version recorded
Jul 24, 2026
Size
32,315 bytes
Repository stars
381
License
a license file GitHub does not identify

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# Skills — Workflow Guide

This directory contains life sciences **skills** in two flavors: **code-centric** (pipeline/toolkit/database) and **prose-centric** (guide).
This is the canonical guide used by coding agents to author new entries. `CLAUDE.md` is only a compatibility import shim; always update `AGENTS.md` when these instructions change.

## Directory Layout

```
├── AGENTS.md              ← you are here
├── registry.yaml          ← index of all entries
├── templates/
│   ├── SKILL_TEMPLATE.md          ← Pipeline-style skills (code-centric)
│   ├── SKILL_TEMPLATE_TOOLKIT.md  ← Toolkit-style skills (code-centric)
│   └── SKILL_TEMPLATE_PROSE.md    ← Guide-style skills (prose-centric)
├── legacy/                ← deprecated entries kept for historical reference;
│                            not in registry, not surfaced to agents
└── skills/                ← all entries (SKILL.md per entry)
    ├── molecular-biology/
    ├── genomics-bioinformatics/
    ├── proteomics-protein-engineering/
    ├── structural-biology-drug-discovery/
    ├── systems-biology-multiomics/
    ├── cell-biology/
    ├── medical-imaging/
    ├── biostatistics/
    ├── data-visualization/
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint
mdr add jaechang-hits/sciagent-skills/AGENTS.md@sha256:57e13a01b9fefdac

The line at the top of this page pins the label git:20260929.35fe6e3, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_dw5uunhkiyzyjrln.svg)](https://markdownregistry.com/a/art_dw5uunhkiyzyjrln)

4 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 2 versions of this file, between Jul 24, 2026 and Sep 29, 2026, about one every 67 days.

versioncommittedcommitsizeaudit
git:20260929.35fe6e3 latest2026-09-29 35fe6e3 32,315 BA view · diff
git:20260724.bf9634e2026-07-24 bf9634e 27,252 BA view

Audit of the latest version

A  14 of 14 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.
  • pass: Size between 200 bytes and 200 KB (32315 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

jaechang-hits/sciagent-skills · 381 stars · license a license file GitHub does not identify · pushed 2026-10-16 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_dw5uunhkiyzyjrln
GET https://markdownregistry.com/api/v1/resolve?ref=jaechang-hits/sciagent-skills/AGENTS.md
GET https://markdownregistry.com/api/v1/blob/57e13a01b9fefdac91a710917576986b1f0e02b33990f3043e7c4167d807a17f

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: how to write a good AGENTS.md · AGENTS.md vs CLAUDE.md · which agent file does what.

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