AGENTS.md@integration-templatesA

AGENTS.md@integration-templates from jaechang-hits/sciagent-skills is an AGENTS.md file: the standing instructions coding agents read in that repo.

Install it, pinned
mdr add jaechang-hits/sciagent-skills/integration-templates/AGENTS.md@git:20260417.ab7289e

Pins git:20260417.ab7289e in mdr.lock. Pin the fingerprint instead.

Audit grade
A, 14 of 14 checks passed
Kind
AGENTS.md file
Repository
jaechang-hits/sciagent-skills
Path
integration-templates/AGENTS.md
Versions recorded
1
Latest version
git:20260417.ab7289e, committed Apr 17, 2026
Size
1,379 bytes
Repository stars
381
License
a license file GitHub does not identify

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# Scientific Skills (SciAgent-Skills)

This project uses [SciAgent-Skills](https://github.com/jaechang-hits/SciAgent-Skills) — 197 life sciences skills for AI coding agents.

## How to use

1. **Discover skills**: Read `.sciagent-skills/registry.yaml`. Each entry has a `description` field — match it to the current task.
2. **Load a skill**: Read the file at the entry's `path`, prefixed with `.sciagent-skills/`. For example, if `path` is `skills/genomics-bioinformatics/scanpy-scrna-seq/SKILL.md`, read `.sciagent-skills/skills/genomics-bioinformatics/scanpy-scrna-seq/SKILL.md`.
3. **Follow the skill**: The SKILL.md contains runnable code examples, key parameters, troubleshooting, and best practices. Use them to guide your implementation.

## Skill types

- **Pipeline** — linear input-to-output workflow (e.g., DESeq2 differential expression)
- **Toolkit** — collection of independent modules (e.g., RDKit cheminformatics)
- **Database** — API wrapper for external data sources (e.g., PubChem, UniProt)
- **Guide** — decision frameworks and best practices (e.g., statistical test selection)

## Tips
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint
mdr add jaechang-hits/sciagent-skills/integration-templates/AGENTS.md@sha256:624bf7380ca6afc0

The line at the top of this page pins the label git:20260417.ab7289e, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_z7htqw6dyyaiazj3.svg)](https://markdownregistry.com/a/art_z7htqw6dyyaiazj3)

4 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 1 version of this file, committed on Apr 17, 2026.

versioncommittedcommitsizeaudit
git:20260417.ab7289e latest2026-04-17 ab7289e 1,379 BA view

Audit of the latest version

A  14 of 14 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.
  • pass: Size between 200 bytes and 200 KB (1379 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

jaechang-hits/sciagent-skills · 381 stars · license a license file GitHub does not identify · pushed 2026-10-16 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_z7htqw6dyyaiazj3
GET https://markdownregistry.com/api/v1/resolve?ref=jaechang-hits/sciagent-skills/integration-templates/AGENTS.md
GET https://markdownregistry.com/api/v1/blob/624bf7380ca6afc0f66c2ce9988c1a4e33bf979e4f925ac8dd27e0c06db30cb8

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: how to write a good AGENTS.md · AGENTS.md vs CLAUDE.md · which agent file does what.

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