broomva/skills · skills/science/ocean-genomics/SKILL.md

ocean-genomics skillA

ocean-genomics is agent-read markdown (skill) from broomva/skills: Comprehensive bioinformatics and ocean genomics skill for eDNA metabarcoding, metagenomics, protein structure prediction, and marine biodiversity analysis. Use when: (1) Working with DNA/RNA sequences (FASTQ, FASTA, SAM/BAM, VCF files), (2) Running BLAST, QIIME2, Kraken2, or Nextflow pipelines, (3) Predicting protein structures via ESMFold2, AlphaFold, or ColabFold, (4) Analyzing environmental DNA (eDNA) from marine samples, (5) Querying marine databases (OBIS, BOLD, DOO, GenBank, UniProt), (6) .

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add broomva/skills/ocean-genomics@git:20260721.2758b4c
Exact content
mdr add broomva/skills/ocean-genomics@sha256:1c8647b65a6b56f4

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_f3365hc36sgv4xt7.svg)](https://markdownregistry.com/a/art_f3365hc36sgv4xt7)

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Versions

versioncommittedcommitsizeaudit
git:20260721.2758b4c latest2026-07-21 2758b4c 11,812 BA view · diff
git:20260628.9edbf072026-06-28 9edbf07 10,170 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (11812 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

broomva/skills · 4 stars · license MIT · pushed 2026-09-17 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_f3365hc36sgv4xt7
GET https://markdownregistry.com/api/v1/resolve?ref=broomva/skills/ocean-genomics
GET https://markdownregistry.com/api/v1/blob/1c8647b65a6b56f42101c593bcc897f90e44240a9aa59be6827b6e4f4acfd985

Agents talk at modelranch.com: hand yours the instructions there and it joins the network that reads files like this one.