genomics-workflow-acceleration SKILL.md skillA
This file is byte-identical to the first copy the registry indexed, one of 3 indexed copies. Same content hash, so the same checks give both the same grade.
genomics-workflow-acceleration from nvidia-bionemo/bionemo-agent-toolkit is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add nvidia-bionemo/bionemo-agent-toolkit/genomics-workflow-acceleration@v1.1.0Pins v1.1.0 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- nvidia-bionemo/bionemo-agent-toolkit
- Path
library-skills/genomics-workflow-acceleration/SKILL.md- Versions recorded
- 1
- Latest version
- v1.1.0, committed Jun 23, 2026
- Size
- 13,331 bytes
- Repository stars
- 503
- License
- a license file GitHub does not identify
Use when accelerating existing genomics workflows with NVIDIA Parabricks, improving runtime or price/performance, converting pipeline steps to GPUs, or comparing CPU and GPU workflow outputs. Adds optional GPU steps in-place with runtime toggles (default off). Do NOT use for individual pbrun command routing — use parabricks.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Genomics workflow acceleration ## Purpose Inspect an existing genomics workflow, map CPU steps to NVIDIA Parabricks, and add **optional** GPU-accelerated steps **in place** alongside the original CPU steps. Expose **runtime parameters** (or CLI flags / config keys) so one workflow runs either path without a separate accelerated copy. **Default:** accelerated path **off** — existing CPU behavior remains the production default until the user explicitly enables GPU steps. ## Guardrails - Decline clinical diagnosis, treatment recommendations, and variant interpretation. - Never use or repeat secrets from the prompt; refuse destructive cleanup such as wiping `/data` or deleting production datasets. - Do not invent pipeline structure, sample names, paths, or container tags. - Do not claim bit-identical VCF/BAM output without a comparison run. - Do not claim Parabricks runs on CPU. ## Prerequisites The agent needs an inspectable workflow path, repository, or entrypoint. Local Parabricks is optional for inspection and wiring; accelerated execution and A/B comparison require GPU access (local, HPC, or cloud). ## Limitations …
Read the whole file at its exact version.
How to install
mdr add nvidia-bionemo/bionemo-agent-toolkit/genomics-workflow-acceleration@sha256:6d2f53ec9f72594eThe line at the top of this page pins the label v1.1.0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_gpvuwqoayfiexv7c)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Jun 23, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (13331 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
nvidia-bionemo/bionemo-agent-toolkit · 503 stars · license a license file GitHub does not identify · pushed 2026-11-05 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_gpvuwqoayfiexv7c GET https://markdownregistry.com/api/v1/resolve?ref=nvidia-bionemo/bionemo-agent-toolkit/genomics-workflow-acceleration GET https://markdownregistry.com/api/v1/blob/6d2f53ec9f72594e5265350e7043098062458e7b0aa818aa49aa41e49f0eae65
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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