pubtator-entity-search SKILL.md skillA
pubtator-entity-search from ethanyoq/skill-hub is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add ethanyoq/skill-hub/pubtator-entity-search@git:20260919.e8b19bfPins git:20260919.e8b19bf in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- ethanyoq/skill-hub
- Path
archives/user-installed-skills/pubtator-entity-search/366b9a940d152650/pubtator-entity-search/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260919.e8b19bf, committed Sep 19, 2026
- Size
- 11,032 bytes
- Repository stars
- 11
- License
- MIT
NLM PubTator3 实体级关系挖掘原子 skill — 在 PubMed 文献里检索"疾病-药物-基因-化学品-突变-物种-细胞系"的标注与关系三元组。当用户问"BTK 与肺曲霉病的关联文献"、"BTK 抑制剂(MeSH D000077180)在哪些研究被讨论"、"标注这些 PMID 中提到的所有疾病/药物/基因实体"、"ibrutinib 的 MeSH/DrugBank ID"、"voriconazole 与 CYP2C19 药物-基因相互作用"、"BRAF V600E 突变 / rs113488022 检索"、"实体共现 / co-mention / 关系挖掘 / 实体规范化 / NER / annotation / entity normalization / disease-gene association / drug-gene interaction / chemical-disease relation" 时使用。无需 API key,跨平台稳定。**实体级 + 关系级**定位 — 不做综合文献检索…
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# PubTator3 Entity & Relation Search 封装 NLM PubTator3 RESTful API,做**实体级标注 + 关系挖掘**。聚焦"疾病 — 药物 — 基因 — 化学品 — 突变 — 物种 — 细胞系"的联动检索。 --- ## 1. 何时使用本技能 **适合 (✅ 自动触发)**: | 用户问题 | 路由 | |---|---| | "找 BTK 与肺曲霉病的关联文献" | ✅ 本技能 (`find_co_mentions`) | | "BTK 抑制剂 (MeSH D000077180) 在哪些研究被讨论" | ✅ 本技能 (`search_by_entity`) | | "标注这些 PMID 中提到的所有疾病/药物/基因实体" | ✅ 本技能 (`annotate_pmid`) | | "ibrutinib 在文献中映射到哪个 MeSH/DrugBank" | ✅ 本技能 (`entity_normalize`) | | "voriconazole 与 CYP2C19 相互作用" | ✅ 本技能 (`search_by_relation`) | | "BRAF V600E / rs113488022 突变文献" | ✅ 本技能 (`search_by_entity` concept=variant) | **不适合 (❌ 路由到其他 skill)**: | 用户问题 | 路由 | |---|---| | "查 PubMed 上近 5 年所有 X 的 RCT" | ❌ → `pubmed-eutils` + Clinical Queries | | "MeSH 树 / 出版类型 / PubDate 综合检索" | ❌ → `pubmed-eutils` | | "Europe PMC 综合检索 + 引文" | ❌ → `europepmc-search` | | "全文段落抽取 / BioC 全文" | ❌ → `bioc-fulltext-fetch` | | "证据等级 / GRADE / 推荐级别" | ❌ → `medical-evidence-grading` | | "正在招募的 X 临床试验" | ❌ → `clinical-trials-v2` | --- ## 2. API 概览 (无需 Key) Base URL: `https://www.ncbi.nlm.nih.gov/research/pubtator3-api/` PubTator3 是 NLM 开放服务,**无需 API key**,但请遵守速率限制 (≤ 5 req/s,失败时指数退避)。 | 端点 | 用途 | |------|------| …
Read the whole file at its exact version.
How to install
mdr add ethanyoq/skill-hub/pubtator-entity-search@sha256:3b30ff7d363a66b1The line at the top of this page pins the label git:20260919.e8b19bf, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_hr3cpurdwpqtcs5i)
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Versions
The registry has recorded 1 version of this file, committed on Sep 19, 2026.
Audit of the latest version
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- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
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- pass: No curl or wget piped into a shell
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Source
ethanyoq/skill-hub · 11 stars · license MIT · pushed 2026-11-07 · branch mine
API
GET https://markdownregistry.com/api/v1/artifacts/art_hr3cpurdwpqtcs5i GET https://markdownregistry.com/api/v1/resolve?ref=ethanyoq/skill-hub/pubtator-entity-search GET https://markdownregistry.com/api/v1/blob/3b30ff7d363a66b10524fabfef160bb855d9141e7b080c274d64f8db0f36e9cd
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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