bioinformatics-project SKILL.md skillA
bioinformatics-project from fmschulz/omics-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add fmschulz/omics-skills/bioinformatics-project@git:20261002.3faa684Pins git:20261002.3faa684 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- fmschulz/omics-skills
- Path
skills/bioinformatics-project/SKILL.md- Versions recorded
- 11
- Latest version
- git:20261002.3faa684, committed Oct 2, 2026
- First version recorded
- Jul 12, 2026
- Size
- 20,704 bytes
- Repository stars
- 11
- License
- MIT
Structure reproducible bioinformatics projects with canonical layouts, restartable drivers, pinned environments, provenance, and lab notebooks. Use when starting or reorganizing a genomics project or making a sequencing analysis rerunnable.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Bioinformatics Project Organization Set up a computational-biology project so a stranger can understand what was done and why, and so every analysis can be rerun end-to-end from a script. Apply this when creating, restructuring, or reproducibility-hardening any genomics, metagenomics, sequencing, or computational-biology project. Two assumptions drive every rule below (Noble 2009): a stranger must be able to reconstruct the analysis from the files alone, and everything will be rerun (with new data, new parameters, or a fixed bug), so build each experiment to re-execute from a script, never from memory. ## Instructions ### New project startup workflow Before creating directories or running the first command, turn the project into a small written contract: 1. Name the project with a durable, specific directory name. 2. Write the objective, analysis tracks, expected deliverables, input data types, compute environment, and known reference databases in `README.md`. 3. Create `tasks/METHODS.md` immediately and record every setup command, software version, database path, option, seed, and SLURM job ID as work proceeds. …
Read the whole file at its exact version.
How to install
mdr add fmschulz/omics-skills/bioinformatics-project@sha256:6d28a78d89a5e64aThe line at the top of this page pins the label git:20261002.3faa684, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_k6ira7sve7gn7dv5)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 11 versions of this file, between Jul 12, 2026 and Oct 2, 2026, about one every 8 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20261002.3faa684 latest | 2026-10-02 | 3faa684 | 20,704 B | A | view · diff |
| git:20261001.bf5afd6 | 2026-10-01 | bf5afd6 | 19,632 B | A | view · diff |
| git:20260928.5fe185c | 2026-09-28 | 5fe185c | 18,742 B | A | view · diff |
| git:20260928.8c1eb24 | 2026-09-28 | 8c1eb24 | 18,648 B | A | view · diff |
| git:20260928.10f49fd | 2026-09-28 | 10f49fd | 18,619 B | A | view · diff |
| git:20260926.cbce041 | 2026-09-26 | cbce041 | 18,451 B | A | view · diff |
| git:20260825.bd47e68 | 2026-08-25 | bd47e68 | 18,297 B | A | view · diff |
| git:20260807.4acaed9 | 2026-08-07 | 4acaed9 | 18,330 B | A | view · diff |
| git:20260712.3675171 | 2026-07-12 | 3675171 | 18,638 B | A | view · diff |
| git:20260712.81da182 | 2026-07-12 | 81da182 | 18,337 B | A | view · diff |
| git:20260712.d1e935a | 2026-07-12 | d1e935a | 17,262 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (20704 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
fmschulz/omics-skills · 11 stars · license MIT · pushed 2026-10-02 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_k6ira7sve7gn7dv5 GET https://markdownregistry.com/api/v1/resolve?ref=fmschulz/omics-skills/bioinformatics-project GET https://markdownregistry.com/api/v1/blob/6d28a78d89a5e64a673f3ac2227023e8fcf4d83414a9e1cc7f0ea0a911f706b3
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.