fmschulz/omics-skills · skills/bioinformatics-project/SKILL.md

bioinformatics-project skillA

bioinformatics-project is agent-read markdown (skill) from fmschulz/omics-skills: Structure reproducible bioinformatics projects with canonical layouts, restartable drivers, pinned environments, provenance, and lab notebooks. Use when starting or reorganizing a genomics project or making a sequencing analysis rerunnable..

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add fmschulz/omics-skills/bioinformatics-project@git:20260825.bd47e68
Exact content
mdr add fmschulz/omics-skills/bioinformatics-project@sha256:47a87acab78b6700

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_k6ira7sve7gn7dv5.svg)](https://markdownregistry.com/a/art_k6ira7sve7gn7dv5)

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Versions

versioncommittedcommitsizeaudit
git:20260825.bd47e68 latest2026-08-25 bd47e68 18,297 BA view · diff
git:20260807.4acaed92026-08-07 4acaed9 18,330 BA view · diff
git:20260712.36751712026-07-12 3675171 18,638 BA view · diff
git:20260712.81da1822026-07-12 81da182 18,337 BA view · diff
git:20260712.d1e935a2026-07-12 d1e935a 17,262 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (18297 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

fmschulz/omics-skills · 7 stars · license MIT · pushed 2026-09-05 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_k6ira7sve7gn7dv5
GET https://markdownregistry.com/api/v1/resolve?ref=fmschulz/omics-skills/bioinformatics-project
GET https://markdownregistry.com/api/v1/blob/47a87acab78b6700c3a57e6eab6a867c35ccd2d922204e157c57e48378570e3f