fair-esm2 SKILL.md skillA
fair-esm2 from yichen-zju/claude-for-research is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add yichen-zju/claude-for-research/fair-esm2@git:20260930.9b33ccfPins git:20260930.9b33ccf in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- yichen-zju/claude-for-research
- Path
skills/fair-esm2/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260930.9b33ccf, committed Sep 30, 2026
- Size
- 923 bytes
- Repository stars
- 10
- License
- none declared
Use ESM2 protein language models for embeddings, mutation scoring, remote homology, or representation analysis. Use when a task needs protein embeddings, zero-shot variant scores, clustering, or sequence-function triage.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Fair ESM2 Use this skill for ESM2-style protein language model analysis. Workflow: 1. Normalize proteins into FASTA with stable identifiers and mutation notation. 2. Verify the local package, checkpoint, endpoint, or notebook route before execution. 3. Save embeddings, variant-score tables, clustering plots, model version, command, and runtime logs. 4. Compare model-derived rankings against UniProt, structures, conservation, assays, or literature. 5. Mark sequence regions with poor coverage, disorder, low homology, or domain-boundary ambiguity. Use ESM2 outputs as features or hypotheses unless a source-backed validation step supports the conclusion.
Read the whole file at its exact version.
How to install
mdr add yichen-zju/claude-for-research/fair-esm2@sha256:bf2a33b1168c35c5The line at the top of this page pins the label git:20260930.9b33ccf, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_luylhjv6lv6llbnj)
2 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Sep 30, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (923 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
yichen-zju/claude-for-research · 10 stars · license none declared · pushed 2026-10-21 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_luylhjv6lv6llbnj GET https://markdownregistry.com/api/v1/resolve?ref=yichen-zju/claude-for-research/fair-esm2 GET https://markdownregistry.com/api/v1/blob/bf2a33b1168c35c52fab49b5de803f9efe4a96e650f9f31507ba8085e6f6732c
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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