codonfm-score SKILL.md skillA
codonfm-score from nvidia/skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add nvidia/skills/codonfm-score@git:20261009.329cfc6Pins git:20261009.329cfc6 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- nvidia/skills
- Path
skills/bionemo-codonfm-score/SKILL.md- Versions recorded
- 1
- Latest version
- git:20261009.329cfc6, committed Oct 9, 2026
- Size
- 7,365 bytes
- Repository stars
- 3,871
- License
- Apache-2.0
Validate, prepare, or run public CodonFM Encodon masked-codon variant scoring and review compatibility of its scoring workflows. Use only when the user explicitly requests CodonFM or Encodon, or that context is already established in the conversation. Do not select this skill for a generic variant-scoring request without that context; ask for the variant and intended analysis first.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Score variants with public Encodon Run general masked-codon `mutation_prediction` only. This produces a research signal, not a clinical diagnosis or an expression-direction prediction. ## Instructions First confirm CodonFM or Encodon context in the user's request or established conversation. If that context is missing, ask for any missing variant details and the intended analysis before choosing a model or inspecting model-specific files. The presence of this skill or source files alone does not establish the user's intent. For source reviews and command preparation, inspect the supplied source and metadata without installing the ML runtime. Use an available Python 3 interpreter with standard-library `zipfile`, `json`, and `csv`; do not assume the `python` alias or `unzip` exists. Read archive members directly with `ZipFile.namelist()` and `ZipFile.read()` where possible. If extraction is needed, use a fresh directory from `tempfile.mkdtemp()` or `mktemp -d` and preserve existing checkouts and scratch directories. Check whether `rg` is available; use `grep` or Python if it is absent. Read the source sections needed for the requested command or compatibility question. …
Read the whole file at its exact version.
How to install
mdr add nvidia/skills/codonfm-score@sha256:18f7662a53a86ac5The line at the top of this page pins the label git:20261009.329cfc6, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_nci53cc3d3lasja5)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Oct 9, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (7365 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
nvidia/skills · 3,871 stars · license Apache-2.0 · pushed 2026-11-05 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_nci53cc3d3lasja5 GET https://markdownregistry.com/api/v1/resolve?ref=nvidia/skills/codonfm-score GET https://markdownregistry.com/api/v1/blob/18f7662a53a86ac5fc695261e81d15b904fe32d5740dc57b2eeffd71c40a356f
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.