deepchem SKILL.md skillA

deepchem from marielynneblock/arcanum-artifex is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned
mdr add marielynneblock/arcanum-artifex/deepchem@git:20260710.0115f49

Pins git:20260710.0115f49 in mdr.lock. Pin the fingerprint instead.

Audit grade
A, 17 of 17 checks passed
Kind
SKILL.md skill
Repository
marielynneblock/arcanum-artifex
Path
skills/scientific/deepchem/SKILL.md
Versions recorded
5
Latest version
git:20260710.0115f49, committed Jul 10, 2026
First version recorded
Apr 6, 2026
Size
17,786 bytes
Repository stars
4
License
none declared

Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet benchmarks. Best for quick experiments with pre-trained models, diverse molecular representations. For graph-first PyTorch workflows use torchdrug; for benchmark datasets use pytdc.

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# DeepChem

## Overview

DeepChem is a comprehensive Python library for applying machine learning to chemistry, materials science, and biology. Enable molecular property prediction, drug discovery, materials design, and biomolecule analysis through specialised neural networks, molecular featurization methods, and pretrained models.

## When to Use This Skill

This skill should be used when:
- Loading and processing molecular data (SMILES strings, SDF files, protein sequences)
- Predicting molecular properties (solubility, toxicity, binding affinity, ADMET properties)
- Training models on chemical/biological datasets
- Using MoleculeNet benchmark datasets (Tox21, BBBP, Delaney, etc.)
- Converting molecules to ML-ready features (fingerprints, graph representations, descriptors)
- Implementing graph neural networks for molecules (GCN, GAT, MPNN, AttentiveFP)
- Applying transfer learning with pretrained models (ChemBERTa, GROVER, MolFormer)
- Predicting crystal/materials properties (bandgap, formation energy)
- Analysing protein or DNA sequences

## Core Capabilities

### 1. Molecular Data Loading and Processing

DeepChem provides specialised loaders for various chemical data formats:
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint
mdr add marielynneblock/arcanum-artifex/deepchem@sha256:41ee386dadbc965f

The line at the top of this page pins the label git:20260710.0115f49, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_oy4abobwleixd3it.svg)](https://markdownregistry.com/a/art_oy4abobwleixd3it)

4 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 5 versions of this file, between Apr 6, 2026 and Jul 10, 2026, about one every 24 days.

versioncommittedcommitsizeaudit
git:20260710.0115f49 latest2026-07-10 0115f49 17,786 BA view · diff
git:20260710.d1b3aa82026-07-10 d1b3aa8 17,782 BA view · diff
git:20260710.ffb34002026-07-10 ffb3400 17,782 BA view · diff
git:20260515.b861afb2026-05-15 b861afb 17,782 BA view · diff
git:20260406.05dff342026-04-06 05dff34 17,783 BA view

Audit of the latest version

A  17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (17786 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

marielynneblock/arcanum-artifex · 4 stars · license none declared · pushed 2026-09-19 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_oy4abobwleixd3it
GET https://markdownregistry.com/api/v1/resolve?ref=marielynneblock/arcanum-artifex/deepchem
GET https://markdownregistry.com/api/v1/blob/41ee386dadbc965f2fba19a1d22f50309ce086d82af713b1398dc38bed6763ed

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.

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Every file in marielynneblock/arcanum-artifex

Other files named deepchem

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