deeptools SKILL.md skillA
deeptools from marielynneblock/arcanum-artifex is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add marielynneblock/arcanum-artifex/deeptools@git:20260710.0115f49Pins git:20260710.0115f49 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- marielynneblock/arcanum-artifex
- Path
skills/scientific/deeptools/SKILL.md- Versions recorded
- 5
- Latest version
- git:20260710.0115f49, committed Jul 10, 2026
- First version recorded
- Apr 6, 2026
- Size
- 17,984 bytes
- Repository stars
- 4
- License
- none declared
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualisation.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# deepTools: NGS Data Analysis Toolkit ## Overview deepTools is a comprehensive suite of Python command-line tools designed for processing and analysing high-throughput sequencing data. Use deepTools to perform quality control, normalise data, compare samples, and generate publication-quality visualisations for ChIP-seq, RNA-seq, ATAC-seq, MNase-seq, and other NGS experiments. **Core capabilities:** - Convert BAM alignments to normalised coverage tracks (bigWig/bedGraph) - Quality control assessment (fingerprint, correlation, coverage) - Sample comparison and correlation analysis - Heatmap and profile plot generation around genomic features - Enrichment analysis and peak region visualisation ## When to Use This Skill This skill should be used when: - **File conversion**: "Convert BAM to bigWig", "generate coverage tracks", "normalise ChIP-seq data" - **Quality control**: "check ChIP quality", "compare replicates", "assess sequencing depth", "QC analysis" - **Visualisation**: "create heatmap around TSS", "plot ChIP signal", "visualise enrichment", "generate profile plot" - **Sample comparison**: "compare treatment vs control", "correlate samples", "PCA analysis" …
Read the whole file at its exact version.
How to install
mdr add marielynneblock/arcanum-artifex/deeptools@sha256:3e781fd1245da3a1The line at the top of this page pins the label git:20260710.0115f49, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_rucg27tqlr7l3cfs)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 5 versions of this file, between Apr 6, 2026 and Jul 10, 2026, about one every 24 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260710.0115f49 latest | 2026-07-10 | 0115f49 | 17,984 B | A | view · diff |
| git:20260710.d1b3aa8 | 2026-07-10 | d1b3aa8 | 17,984 B | A | view · diff |
| git:20260710.ffb3400 | 2026-07-10 | ffb3400 | 17,984 B | A | view · diff |
| git:20260515.b861afb | 2026-05-15 | b861afb | 17,984 B | A | view · diff |
| git:20260406.05dff34 | 2026-04-06 | 05dff34 | 17,985 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (17984 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
marielynneblock/arcanum-artifex · 4 stars · license none declared · pushed 2026-09-19 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_rucg27tqlr7l3cfs GET https://markdownregistry.com/api/v1/resolve?ref=marielynneblock/arcanum-artifex/deeptools GET https://markdownregistry.com/api/v1/blob/3e781fd1245da3a154eec826cd113c3693ec974aa9ff1de481e135b0a037e322
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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