biomni SKILL.md skillA
biomni from aicodedecode/awesome-muse-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add aicodedecode/awesome-muse-skills/biomni@git:20260927.806f3e1Pins git:20260927.806f3e1 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- aicodedecode/awesome-muse-skills
- Path
skills-imported/biomni/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260927.806f3e1, committed Sep 27, 2026
- Size
- 9,779 bytes
- Repository stars
- 25
- License
- MIT
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Biomni ## Overview Biomni is an open-source biomedical AI agent framework from Stanford's SNAP lab that autonomously executes complex research tasks across biomedical domains. Use this skill when working on multi-step biological reasoning tasks, analyzing biomedical data, or conducting research spanning genomics, drug discovery, molecular biology, and clinical analysis. ## Core Capabilities Biomni excels at: 1. **Multi-step biological reasoning** - Autonomous task decomposition and planning for complex biomedical queries 2. **Code generation and execution** - Dynamic analysis pipeline creation for data processing 3. **Knowledge retrieval** - Access to ~11GB of integrated biomedical databases and literature 4. **Cross-domain problem solving** - Unified interface for genomics, proteomics, drug discovery, and clinical tasks ## When to Use This Skill Use biomni for: - **CRISPR screening** - Design screens, prioritize genes, analyze knockout effects - **Single-cell RNA-seq** - Cell type annotation, differential expression, trajectory analysis - **Drug discovery** - ADMET prediction, target identification, compound optimization …
Read the whole file at its exact version.
How to install
mdr add aicodedecode/awesome-muse-skills/biomni@sha256:4e04b64bf45c8e78The line at the top of this page pins the label git:20260927.806f3e1, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_snafkum5j4gfzqrb)
2 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Sep 27, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (9779 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
aicodedecode/awesome-muse-skills · 25 stars · license MIT · pushed 2026-10-10 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_snafkum5j4gfzqrb GET https://markdownregistry.com/api/v1/resolve?ref=aicodedecode/awesome-muse-skills/biomni GET https://markdownregistry.com/api/v1/blob/4e04b64bf45c8e78d1e426beaeac8e732aa2bafb92561c6d1fc16b3095611a33
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.