gnn-ontology SKILL.md skillA
gnn-ontology from activeinferenceinstitute/generalizednotationnotation is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add activeinferenceinstitute/generalizednotationnotation/gnn-ontology@git:20260906.e62b9e9Pins git:20260906.e62b9e9 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- activeinferenceinstitute/generalizednotationnotation
- Path
src/gnn/ontology/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260906.e62b9e9, committed Sep 6, 2026
- Size
- 4,089 bytes
- Repository stars
- 35
- License
- a license file GitHub does not identify
GNN Active Inference ontology processing and validation. Use when working with ActInfOntologyAnnotation sections, mapping GNN variables to ontology terms, validating semantic annotations, or exploring Active Inference concept hierarchies.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# GNN Ontology Processing (Step 10)
## Purpose
Processes Active Inference ontology annotations in GNN models. Maps GNN variables to standardized Active Inference concepts and validates semantic consistency.
## Key Commands
```bash
# Run ontology processing
python src/gnn/10_ontology.py --target-dir input/gnn_files --output-dir output --verbose
# As part of pipeline
python src/gnn/main.py --only-steps 10 --verbose
```
## Ontology Term Mapping
| GNN Annotation | Ontology Concept | Description |
| ---------------- | ------------------ | ------------- |
| `LikelihoodMatrix` | A matrix | Observation model |
| `TransitionMatrix` | B matrix | State dynamics |
| `HiddenState` | s vector | Latent state beliefs |
| `Observation` | o vector | Sensory observations |
| `Policy` | π | Action sequences |
| `Preference` | C matrix | Preferred observations |
## API
```python
from gnn.ontology import (
process_ontology,
parse_gnn_ontology_section,
process_gnn_ontology,
analyze_ontology_content,
load_defined_ontology_terms,
validate_annotations,
suggest_terms,
summarise_coverage,
build_ontology_terms,
generate_ontology_report_for_file,
…Read the whole file at its exact version.
How to install
mdr add activeinferenceinstitute/generalizednotationnotation/gnn-ontology@sha256:71e8b1b900c34950The line at the top of this page pins the label git:20260906.e62b9e9, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_t5bnuqapaj7zw3qa)
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Versions
The registry has recorded 1 version of this file, committed on Sep 6, 2026.
Audit of the latest version
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- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
activeinferenceinstitute/generalizednotationnotation · 35 stars · license a license file GitHub does not identify · pushed 2026-11-05 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_t5bnuqapaj7zw3qa GET https://markdownregistry.com/api/v1/resolve?ref=activeinferenceinstitute/generalizednotationnotation/gnn-ontology GET https://markdownregistry.com/api/v1/blob/71e8b1b900c34950d81ce6c8b1b838eaab2dd28b281658bad70b47c32b92ab6f
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Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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