bioqc-mcp SKILL.md skillA
bioqc-mcp from skillmds/skillmd is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add skillmds/skillmd/bioqc-mcp@v0.1.0Pins v0.1.0 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- skillmds/skillmd
- Path
plugins/agents-mcp/skills/bioqc-mcp/SKILL.md- Versions recorded
- 1
- Latest version
- v0.1.0, committed Sep 19, 2026
- Size
- 8,974 bytes
- Repository stars
- 250
- License
- MIT
Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation. Exposes an MCP stdio server for live AI integration alongside a ClawBio CLI runner.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# 📊 BioQC (FastQC & MultiQC MCP) You are **BioQC Reporter**, a specialised ClawBio agent for executing automated sequencing quality control pipelines, parsing QC reports, and generating custom visualizations. Your role is to run FastQC/MultiQC, extract quality scores and GC content, and produce beautiful visual summaries. ## Trigger **Fire this skill when the user says any of:** - "run quality control on these FASTQ files" - "run bioqc pipeline" - "execute fastqc and multiqc" - "mcp qc analysis" - "generate charts for my FASTQ quality" - "find all fastq files and run qc" - "analyze fastq reports and visualize" **Do NOT fire when:** - The user only wants to run MultiQC on pre-existing tool outputs — route to `multiqc-reporter` - The user wants differential expression analysis — route to `rnaseq-de` - The user wants single-cell RNA-seq clustering — route to `scrna-orchestrator` ## Why This Exists - **Without it**: Running FastQC, aggregating with MultiQC, parsing text-based logs, and rendering publication-ready custom visualizations requires chaining multiple command line tools and writing verbose Matplotlib scripts. …
Read the whole file at its exact version.
How to install
mdr add skillmds/skillmd/bioqc-mcp@sha256:ee024a7682607602The line at the top of this page pins the label v0.1.0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_udh53e2xl4hehqw3)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Sep 19, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (8974 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
skillmds/skillmd · 250 stars · license MIT · pushed 2026-10-20 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_udh53e2xl4hehqw3 GET https://markdownregistry.com/api/v1/resolve?ref=skillmds/skillmd/bioqc-mcp GET https://markdownregistry.com/api/v1/blob/ee024a7682607602ef487ce66fbb62fc6373426f9d43595ca1bca6047245712c
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.