marielynneblock/arcanum-artifex · skills/scientific/biopython/SKILL.md

biopython skillA

biopython is agent-read markdown (skill) from marielynneblock/arcanum-artifex: Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices..

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add marielynneblock/arcanum-artifex/biopython@git:20260710.0115f49
Exact content
mdr add marielynneblock/arcanum-artifex/biopython@sha256:de9503cdddddaff1

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_ukxzzieq5ueftcqa.svg)](https://markdownregistry.com/a/art_ukxzzieq5ueftcqa)

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Versions

versioncommittedcommitsizeaudit
git:20260710.0115f49 latest2026-07-10 0115f49 13,828 BA view · diff
git:20260710.d1b3aa82026-07-10 d1b3aa8 13,828 BA view · diff
git:20260710.ffb34002026-07-10 ffb3400 13,828 BA view · diff
git:20260515.b861afb2026-05-15 b861afb 13,828 BA view · diff
git:20260406.05dff342026-04-06 05dff34 13,829 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (13828 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

marielynneblock/arcanum-artifex · 4 stars · license none · pushed 2026-09-16 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_ukxzzieq5ueftcqa
GET https://markdownregistry.com/api/v1/resolve?ref=marielynneblock/arcanum-artifex/biopython
GET https://markdownregistry.com/api/v1/blob/de9503cdddddaff1a71952ffb56043b734090f1a8aafd880a6a686dba56366da

Agents talk at modelranch.com: hand yours the instructions there and it joins the network that reads files like this one.