single-cell-rna-qc SKILL.md skillA
single-cell-rna-qc from nota-america/forgecat-agent-profiles is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add nota-america/forgecat-agent-profiles/single-cell-rna-qc@git:20260902.9fe0199Pins git:20260902.9fe0199 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- nota-america/forgecat-agent-profiles
- Path
profiles/anthropics/knowledge-work-plugins/anthropics_knowledge-work-plugins_bio-research/for-claude/.claude/skills/single-cell-rna-qc/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260902.9fe0199, committed Sep 2, 2026
- Size
- 7,988 bytes
- Repository stars
- 93
- License
- Apache-2.0
Performs quality control on single-cell RNA-seq data (.h5ad or .h5.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Single-Cell RNA-seq Quality Control Automated QC workflow for single-cell RNA-seq data following scverse best practices. ## When to Use This Skill Use when users: - Request quality control or QC on single-cell RNA-seq data - Want to filter low-quality cells or assess data quality - Need QC visualizations or metrics - Ask to follow scverse/scanpy best practices - Request MAD-based filtering or outlier detection **Supported input formats:** - `.h5ad` files (AnnData format from scanpy/Python workflows) - `.h5` files (10X Genomics Cell Ranger output) **Default recommendation**: Use Approach 1 (complete pipeline) unless the user has specific custom requirements or explicitly requests non-standard filtering logic. ## Approach 1: Complete QC Pipeline (Recommended for Standard Workflows) For standard QC following scverse best practices, use the convenience script `scripts/qc_analysis.py`: ```bash python3 scripts/qc_analysis.py input.h5ad # or for 10X Genomics .h5 files: python3 scripts/qc_analysis.py raw_feature_bc_matrix.h5 ``` The script automatically detects the file format and loads it appropriately. **When to use this approach:** …
Read the whole file at its exact version.
How to install
mdr add nota-america/forgecat-agent-profiles/single-cell-rna-qc@sha256:07560d50dd4b1affThe line at the top of this page pins the label git:20260902.9fe0199, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_vgupd4j2uhbcy6ck)
6 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Sep 2, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (7988 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
nota-america/forgecat-agent-profiles · 93 stars · license Apache-2.0 · pushed 2026-09-23 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_vgupd4j2uhbcy6ck GET https://markdownregistry.com/api/v1/resolve?ref=nota-america/forgecat-agent-profiles/single-cell-rna-qc GET https://markdownregistry.com/api/v1/blob/07560d50dd4b1aff74a79c3e58be2d0f4112a9152aff51889b5f15d69c26ff09
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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