analysis-workflow SKILL.md skillA
analysis-workflow from xuzhougeng/wisp-science is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add xuzhougeng/wisp-science/analysis-workflow@git:20260907.195f6b9Pins git:20260907.195f6b9 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- xuzhougeng/wisp-science
- Path
skills/analysis-workflow/SKILL.md- Versions recorded
- 4
- Latest version
- git:20260907.195f6b9, committed Sep 7, 2026
- First version recorded
- Jul 31, 2026
- Size
- 6,259 bytes
- Repository stars
- 1,049
- License
- AGPL-3.0
Organize multi-step scientific analyses into reproducible, self-contained modules. Use for workflows such as QC→PCA→DEG→GSEA that produce scripts, inputs, figures, tables, and methods. Creates a stable module layout, records exact inputs/parameters/package and database versions in each module README, keeps large data as references instead of copies, and verifies outputs before completion.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Reproducible Analysis Modules Use this skill for a scientific workflow with two or more analysis stages or when a stage produces scripts plus result files. It defines project organization and methods capture; load `figure-style` as well whenever a stage creates or revises a plot. ## 1. Plan module boundaries Before writing outputs, list the modules and the dependency edges between them. Use stable ASCII names. Conventional acronyms such as `QC`, `PCA`, `DEG`, and `GSEA` may stay uppercase; otherwise prefer a short kebab-case name. Respect a compatible layout that already exists. Do not reorganize unrelated user files merely to impose this convention. ## 2. Default module layout Create only directories the module actually needs: ```text <module>/ ├── scripts/ ├── input/ ├── output/ │ ├── figures/ │ └── tables/ └── README.md ``` - `scripts/` contains the executable source for this module. - `input/` contains small module-specific inputs or a manifest/reference to the canonical data. Do not duplicate a large dataset by default. - `output/figures/` contains rendered figures from this module only. …
Read the whole file at its exact version.
How to install
mdr add xuzhougeng/wisp-science/analysis-workflow@sha256:1b6c9c1bcdb8fda8The line at the top of this page pins the label git:20260907.195f6b9, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_vlicm5553iqyyss3)
5 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 4 versions of this file, between Jul 31, 2026 and Sep 7, 2026, about one every 13 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260907.195f6b9 latest | 2026-09-07 | 195f6b9 | 6,259 B | A | view · diff |
| git:20260829.fb241fe | 2026-08-29 | fb241fe | 5,841 B | A | view · diff |
| git:20260801.92066a8 | 2026-08-01 | 92066a8 | 4,958 B | A | view · diff |
| git:20260731.97cf55e | 2026-07-31 | 97cf55e | 4,704 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (6259 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
xuzhougeng/wisp-science · 1,049 stars · license AGPL-3.0 · pushed 2026-10-20 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_vlicm5553iqyyss3 GET https://markdownregistry.com/api/v1/resolve?ref=xuzhougeng/wisp-science/analysis-workflow GET https://markdownregistry.com/api/v1/blob/1b6c9c1bcdb8fda80b8ecf00905e1f9915a717a7e8211338233b7769c20fe08c
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.