europepmc-search SKILL.md skillA

europepmc-search from ethanyoq/skill-hub is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned
mdr add ethanyoq/skill-hub/europepmc-search@git:20260912.c74de71

Pins git:20260912.c74de71 in mdr.lock. Pin the fingerprint instead.

Audit grade
A, 17 of 17 checks passed
Kind
SKILL.md skill
Repository
ethanyoq/skill-hub
Path
archives/user-installed-skills/europepmc-search/92dc3a06bb453e44/europepmc-search/SKILL.md
Versions recorded
1
Latest version
git:20260912.c74de71, committed Sep 12, 2026
Size
15,435 bytes
Repository stars
11
License
MIT

Europe PMC RESTful Web Service 多源文献聚合检索原子 skill。**使用本 skill 进行医学文献广召回 / RAG 知识库构建 / 跨库聚合 / 预印本扫描 / 全文链接发现**。一次调用同时召回 PubMed (MED) + PMC + AGRICOLA + CABI + 预印本(bioRxiv / medRxiv / ChemRxiv / Research Square)+ NCBI Bookshelf + 专利,自动按 PMID/PMCID/DOI 三级去重,返回完整元数据(全文 OA 链接、citations、grants 资助信息)。**定位:广召回 · 多源 · RAG 友好**(与 pubmed-eutils 互补 — 后者做单源精准官方检索 + Clinical Queries;本 skill 做"撒网"式多源聚合)。触发词:Europe PMC / EuropePMC / 多源文献聚合 / 广召回 / RAG 召回 / RAG 知识库 / 预印本搜索 / preprint search / bioRxiv / medRxiv /…

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# europepmc-search

Europe PMC RESTful Web Service 的薄封装。**一次请求 = 多源召回**:PubMed(MED)、PubMed Central(PMC)、AGRICOLA(AGR)、CABI(CBA)、预印本(PPR,涵盖 bioRxiv/medRxiv/ChemRxiv/arXiv 生命科学子集/Research Square/SSRN/Preprints.org)、专利(PAT)、NCBI Bookshelf(NBK)、ETHOS 论文集等。

跨平台 Python(Windows / macOS / Linux 均可),无需 Anaconda 锁定环境。

## 1. 何时使用本 skill

| 场景 | 用本 skill | 应改用 |
|------|-----------|------|
| RAG 知识库构建,需"撒网"式广召回 | ✅ | — |
| 同时要 PubMed + 预印本 | ✅ | — |
| 拿 DOI 反查全文 OA 链接 | ✅ | — |
| 找特定基金(NIH/NSFC/Wellcome)资助的研究 | ✅(`grant_id`) | — |
| 只要 PubMed 官方源 + Clinical Queries | ❌ | `pubmed-eutils` |
| 抽取已知 PMCID 的全文 XML / 段落 | ❌ | `bioc-fulltext-fetch` |
| 临床试验注册号检索 | ❌ | `clinical-trials-v2` |
| 实体(基因/疾病/化合物)关联 | ❌ | `pubtator-entity-search` |
| 给文献排 GRADE 等级 | ❌ | `medical-evidence-grading` |
| 报告 Appendix C 终态参考文献 | ❌ | `evidence-appendix-sync` |

**与 pubmed-eutils 的差异化(必读)**:

- pubmed-eutils:PubMed **单源** · Clinical Queries · MeSH 精准 · PubDate 严格范围 → **高精准**
- europepmc-search:**多源聚合** + 自动去重 + 全文链接 + citations metadata → **高召回**
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint
mdr add ethanyoq/skill-hub/europepmc-search@sha256:c2312cf567babbbd

The line at the top of this page pins the label git:20260912.c74de71, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_w3iwso6pt2zgurpy.svg)](https://markdownregistry.com/a/art_w3iwso6pt2zgurpy)

3 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 1 version of this file, committed on Sep 12, 2026.

versioncommittedcommitsizeaudit
git:20260912.c74de71 latest2026-09-12 c74de71 15,435 BA view

Audit of the latest version

A  17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (15435 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

ethanyoq/skill-hub · 11 stars · license MIT · pushed 2026-11-07 · branch mine

API

GET https://markdownregistry.com/api/v1/artifacts/art_w3iwso6pt2zgurpy
GET https://markdownregistry.com/api/v1/resolve?ref=ethanyoq/skill-hub/europepmc-search
GET https://markdownregistry.com/api/v1/blob/c2312cf567babbbd6f475ab0b83827b83685ee21b2143ac9ffc3fe6a7f41d63a

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.

More from ethanyoq/skill-hub

AGENTS.md AGENTS.md file
ethanyoq/skill-hub · AGENTS.md
git:20260730.c96ba6e · audit A · 11 stars
aact-bulk-trials SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/aact-bulk-trials/e07736f27453c7b6/aact-bulk-trials/SKILL.md · 使用 AACT (Aggregate Analysis of ClinicalTrials.gov) PostgreSQL 数据仓库进行批量、历史、聚合性临床试验数据挖掘。Use this skill when the user…
git:20260912.c74de71 · audit A · 11 stars
aact-bulk-trials SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/aact-bulk-trials/e171d39ba5bce7c9/aact-bulk-trials/SKILL.md · 使用 AACT (Aggregate Analysis of ClinicalTrials.gov) PostgreSQL 数据库进行大批量临床试验历史分析与数据挖掘。触发场景包括:AACT 查询、临床试验批量分析、PostgreSQL…
git:20260912.c74de71 · audit A · 11 stars
adaptive-quality-gate SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/adaptive-quality-gate/b5189ce6c1bdba9b/adaptive-quality-gate/SKILL.md · Use when work produces a deliverable, factual claim, dataset, code change, decision, publication, deployment…
git:20260912.c74de71 · audit A · 11 stars
add-changeset SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/add-changeset/eca9273317fbdf81/add-changeset/SKILL.md · Create a changeset file in .changeset/ that describes a user-facing change for the release notes
git:20260912.84c6c93 · audit A · 11 stars
add-competitor SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/add-competitor/72939df8cfcf87bc/add-competitor/SKILL.md · Add a new competitor to the AI Visibility Tool Directory — researches the tool, generates data, takes a screenshot, and…
git:20260912.84c6c93 · audit A · 11 stars
add-lang SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/add-lang/00700e7d79525f4e/add-lang/SKILL.md · Add tree-sitter language support to codegraph end-to-end — wire the grammar + extractor, write tests, then benchmark…
git:20260912.84c6c93 · audit A · 11 stars
aesthetic SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/aesthetic/a4c80565d9241341/aesthetic/SKILL.md · Create aesthetically beautiful interfaces following proven design principles. Use when building UI/UX, analyzing…
git:20260912.84c6c93 · audit A · 11 stars
agent-eval SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/agent-eval/61ca5bbbd5c736b7/agent-eval/SKILL.md · Benchmark CodeGraph retrieval quality on a real codebase by comparing agent behavior with vs without CodeGraph. Use…
git:20260912.84c6c93 · audit A · 11 stars
agent-reach SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/agent-reach/330e35da8cf10b5e/agent-reach/SKILL.md · MUST USE when user wants to 调研/research/搜索/search/查/找/look up anything on the internet — e.g. 全网调研 X / 帮我调研一下 X / 查一下 X…
git:20260912.84c6c93 · audit A · 11 stars
agent-reach SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/agent-reach/81c9cf0fc08ce044/agent-reach/SKILL.md · MUST USE when user wants to 调研/research/搜索/search/查/找/look up anything on the internet — e.g. 全网调研 X / 帮我调研一下 X / 查一下 X…
git:20260912.84c6c93 · audit A · 11 stars
aliyun-swas-manage SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/aliyun-swas-manage/1f89c6ea527741b3/aliyun-swas-manage/SKILL.md · Use when managing Alibaba Cloud Simple Application Server (SWAS OpenAPI 2020-06-01) resources end-to-end, including…
v1.0.0 · audit A · 11 stars

Every file in ethanyoq/skill-hub

Other files named europepmc-search

europepmc-search SKILL.md skill
ethanyoq/skill-hub · archives/user-installed-skills/europepmc-search/5eec9d3036d956eb/europepmc-search/SKILL.md · Europe PMC RESTful Web Service 多源文献聚合检索原子 skill。一次调用同时召回 PubMed + PMC + AGRICOLA + CABI + 预印本(bioRxiv / medRxiv /…
git:20260912.c74de71 · audit A · 11 stars

Browse by kind, by grade A, or by owner.