ygidtu/trackplot · skills/trackplot/SKILL.md

trackplot skillA

trackplot is agent-read markdown (skill) from ygidtu/trackplot: Generate sashimi-style genome visualization plots (coverage, line, heatmap, IGV read-by-read, HiC, circRNA, motif) from BAM/bigWig/depth/HiC inputs. Use when the user wants to plot NGS data over a genomic region, make sashimi or intron-shrinkage plots, strand density, single-cell barcode-split density, protein domain tracks, or publish-ready PDF/PNG/SVG figures for a locus. Covers CLI usage, config TSV file formats, Docker, and the Python Plot chain API. Use when the user says trackplot, sashimi.

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add ygidtu/trackplot/trackplot@git:20260912.5da5c3e
Exact content
mdr add ygidtu/trackplot/trackplot@sha256:e784fefc46f496ed

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

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Versions

versioncommittedcommitsizeaudit
git:20260912.5da5c3e latest2026-09-12 5da5c3e 7,804 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (7804 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

ygidtu/trackplot · 109 stars · license BSD-3-Clause · pushed 2026-09-12 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_xj74rqp6jawocr3j
GET https://markdownregistry.com/api/v1/resolve?ref=ygidtu/trackplot/trackplot
GET https://markdownregistry.com/api/v1/blob/e784fefc46f496ed0cb8345f5bc63a32e70e3d3afcffe23cceb15984d317f603