csag-extraction SKILL.md skillA
csag-extraction from fmschulz/omics-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add fmschulz/omics-skills/csag-extraction@v0.6.0Pins v0.6.0 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- fmschulz/omics-skills
- Path
skills/csag-extraction/SKILL.md- Versions recorded
- 4
- Latest version
- v0.6.0, committed Aug 7, 2026
- First version recorded
- May 26, 2026
- Size
- 13,090 bytes
- Repository stars
- 11
- License
- MIT
Extract a Conditional Scientific Argumentation Graph and grounded Q&A from a manuscript. Use when representing assertions, contexts, evidence links, and inference steps in machine-readable form.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# CSAG extraction skill ## Goal Convert a manuscript into a **CSAG `PaperExtraction`** instance that is: - **Schema-valid** (LinkML: `assets/csag.yaml`) - **Evidence-grounded** (TextSpans for key objects) - **Canonical** (support/refute only via `EvidenceLink`, chains via `InferenceStep`) - **Conditional** (every Assertion has ≥1 Context) ## Files in this skill - `assets/csag.yaml` — authoritative schema - `assets/csag_qa_templates.yaml` — QA template catalog - `references/CSAG_PLAYBOOK.md` — detailed extraction guide + edge cases ## Quick Reference | Task | Action | |------|--------| | Extract paper | Build one `PaperExtraction` per manuscript, not per search hit. | | Ground claims | Attach important assertions, evidence, and links to TextSpans. | | Validate schema | Run `scripts/validate_paper_extraction.py` before finalizing. | | Review quality | Run `scripts/csag_quality_report.py --strict` and resolve issues. | ## Non‑negotiable invariants 1) **Every Assertion MUST have ≥1 Context** (schema-enforced). 2) **Support/refute polarity ONLY in `EvidenceLink`**. 3) **Contradictions/qualification ONLY in `AssertionRelation`**. 4) **Reasoning chains ONLY as `InferenceStep`**. …
Read the whole file at its exact version.
How to install
mdr add fmschulz/omics-skills/csag-extraction@sha256:ff4e2140cfb6de16The line at the top of this page pins the label v0.6.0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_yc4t6v2w4j4vnvji)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 4 versions of this file, between May 26, 2026 and Aug 7, 2026, about one every 24 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| v0.6.0 latest | 2026-08-07 | 4acaed9 | 13,090 B | A | view · diff |
| v0.6.0 | 2026-07-12 | 3675171 | 13,089 B | A | view · diff |
| v0.6.0 | 2026-07-11 | 5ae6f6f | 12,813 B | A | view · diff |
| v0.6.0 | 2026-05-26 | 498d7f1 | 12,946 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (13090 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
fmschulz/omics-skills · 11 stars · license MIT · pushed 2026-10-02 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_yc4t6v2w4j4vnvji GET https://markdownregistry.com/api/v1/resolve?ref=fmschulz/omics-skills/csag-extraction GET https://markdownregistry.com/api/v1/blob/ff4e2140cfb6de16a0c00ff0cdba025dc05e8d4bef6f620c66c47a264c911940
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.