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engreitzlab/perturbnmf

7 instruction files for AI agents, collected from engreitzlab/perturbnmf. Install any of them at an exact version with mdr add engreitzlab/perturbnmf/<name>.

h5mu-structure SKILL.md skill
engreitzlab/perturbnmf · .claude/skills/h5mu-structure/SKILL.md · Inspect an .h5mu (MuData) file and generate a structured txt summary of its contents in a tree format. Lists all…
git:20260929.add0212 · audit A · 10 stars
perturbNMF-runner SKILL.md skill
engreitzlab/perturbnmf · .claude/skills/perturbNMF-runner/SKILL.md · Interactive PerturbNMF pipeline runner. Guides users through configuring and submitting PerturbNMF inference…
git:20260929.4c2f8fb · audit A · 10 stars
pipeline-drift-check SKILL.md skill
engreitzlab/perturbnmf · .claude/skills/pipeline-drift-check/SKILL.md · Detect parameter drift across the PerturbNMF pipeline. Cross-checks every `--flag` defined in `src/**/*.py` (argparse)…
git:20260929.add0212 · audit A · 10 stars
run-tests SKILL.md skill
engreitzlab/perturbnmf · .claude/skills/run-tests/SKILL.md · Run the cNMF benchmarking pipeline test suite end-to-end: clean previous outputs, run sk-cNMF (CPU) and torch-cNMF (GPU…
git:20260929.add0212 · audit A · 10 stars
CLAUDE.md CLAUDE.md file
engreitzlab/perturbnmf · CLAUDE.md
git:20260929.add0212 · audit A · 10 stars
DESIGN.md@src/Stage3_Interpretation/C_Annotation/4.Hypothesis/perturbseq-hypotheses DESIGN.md file
engreitzlab/perturbnmf · src/Stage3_Interpretation/C_Annotation/4.Hypothesis/perturbseq-hypotheses/DESIGN.md
git:20261019.294698d · audit A · 10 stars
perturbseq-hypotheses SKILL.md skill
engreitzlab/perturbnmf · src/Stage3_Interpretation/C_Annotation/4.Hypothesis/perturbseq-hypotheses/SKILL.md · Turn a finished Perturb-seq / PerturbNMF screen (cNMF programs, per-perturbation effect tables, NTC null, regulator…
git:20261019.294698d · audit A · 10 stars

Source

github.com/engreitzlab/perturbnmf · 10 stars · license MIT · pushed 2026-10-20