rfd4-proteina-evaluate SKILL.md skillA
rfd4-proteina-evaluate from nvidia-bionemo/bionemo-agent-toolkit is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add nvidia-bionemo/bionemo-agent-toolkit/rfd4-proteina-evaluate@git:20261020.65f97c4Pins git:20261020.65f97c4 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- nvidia-bionemo/bionemo-agent-toolkit
- Path
skills/bionemo-agent-toolkit/skills/rfd4-proteina-evaluate/SKILL.md- Versions recorded
- 1
- Latest version
- git:20261020.65f97c4, committed Oct 20, 2026
- Size
- 9,633 bytes
- Repository stars
- 503
- License
- a license file GitHub does not identify
Use when scoring existing RFD4-Proteina designs, aggregating metrics, adding custom metrics, or clustering diversity.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# RFD4-Proteína Evaluate (post-hoc metrics + aggregation) ## Purpose Score structures that already exist on disk, without re-running generation. `evaluate.py` shares the exact same metrics stack and Hydra config as generation, so any `metrics_tags` or custom-metric config behaves identically inline and offline. The two things this skill exists to get right: (1) pick the *right* metric tags for the design task (and know which ones silently need the AF3 container), and (2) aggregate the parallel per-job CSVs into one table before you try to read results. Run everything from the repository root (the directory containing `.project-root`). **All arguments are Hydra `key=value`, never `--key value`.** ## Inline (during generation) vs post-hoc (this skill) - **Inline** — pass `metrics_tags` to `generate.py`; metrics run immediately after each design and land in `per_example_metrics.csv` next to the CIFs. Best when you already know what you want measured. See **rfd4-proteina-generate**. - **Post-hoc** — this skill. Score a folder of CIFs you already generated, add metrics you forgot to turn on, or re-score with different tags. Same config, same outputs. ## Prerequisites …
Read the whole file at its exact version.
How to install
mdr add nvidia-bionemo/bionemo-agent-toolkit/rfd4-proteina-evaluate@sha256:be647da3834875e7The line at the top of this page pins the label git:20261020.65f97c4, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_2x5fgrbjfodw775t)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Oct 20, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (9633 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
nvidia-bionemo/bionemo-agent-toolkit · 503 stars · license a license file GitHub does not identify · pushed 2026-11-05 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_2x5fgrbjfodw775t GET https://markdownregistry.com/api/v1/resolve?ref=nvidia-bionemo/bionemo-agent-toolkit/rfd4-proteina-evaluate GET https://markdownregistry.com/api/v1/blob/be647da3834875e73ae897711de2cf7e4a39ddc5123029fdf7b9d1d3bd697966
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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