molmim-nim SKILL.md skillA
This file is byte-identical to the first copy the registry indexed, one of 3 indexed copies. Same content hash, so the same checks give both the same grade.
molmim-nim from nvidia-bionemo/bionemo-agent-toolkit is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add nvidia-bionemo/bionemo-agent-toolkit/molmim-nim@git:20260923.b36e938Pins git:20260923.b36e938 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- nvidia-bionemo/bionemo-agent-toolkit
- Path
skills/bionemo-agent-toolkit/skills/molmim-nim/SKILL.md- Versions recorded
- 2
- Latest version
- git:20260923.b36e938, committed Sep 23, 2026
- First version recorded
- Aug 25, 2026
- Size
- 7,592 bytes
- Repository stars
- 503
- License
- a license file GitHub does not identify
Use this skill for MolMIM, NVIDIA's BioNeMo NIM microservice for small-molecule latent-space generation and optimization. Invoke for MolMIM, molecular embeddings, hidden states, latent decoding, sampling around a seed SMILES, CMA-ES guided molecule generation, QED or plogP optimization, hosted NVIDIA API calls, or local Docker deployment.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# MolMIM NIM Generate, sample, embed, and decode small molecules with MolMIM. Use this guide for first-pass hosted/local usage; load supplemental files only when needed: - `references/api.md`: endpoints, schema, Docker flags, response fields. - `references/science.md`: use cases, strengths, limits, and handoffs. - `references/parameters.md`: generation, sampling, and optimization effects. - `references/validation.md`: SMILES/property/artifact checks. - `references/examples.md`: compact hosted/local request patterns. ## Choose Mode Ask only when context is unclear: > Hosted NVIDIA API or local Docker NIM? See [`references/api.md`](references/api.md) under **Endpoints** for the full hosted/local endpoint list. Mode difference: the hosted API reference exposes `/generate`; the local container exposes the broader latent-space workflow (`/embedding`, `/hidden`, `/decode`, `/sampling`, `/generate`). Do not invent hosted latent endpoints. Hosted requests use `Authorization: Bearer $NGC_API_KEY`. Local inference uses no auth header after readiness. ## Local Docker Use shell env first; source repo-root `.env` only if present. Do not print keys. …
Read the whole file at its exact version.
How to install
mdr add nvidia-bionemo/bionemo-agent-toolkit/molmim-nim@sha256:14f8ac899092f06fThe line at the top of this page pins the label git:20260923.b36e938, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_4noa46gyeb6rmp4w)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 2 versions of this file, between Aug 25, 2026 and Sep 23, 2026, about one every 30 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260923.b36e938 latest | 2026-09-23 | b36e938 | 7,592 B | A | view · diff |
| git:20260825.0e67a61 | 2026-08-25 | 0e67a61 | 7,597 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (7592 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
nvidia-bionemo/bionemo-agent-toolkit · 503 stars · license a license file GitHub does not identify · pushed 2026-11-05 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_4noa46gyeb6rmp4w GET https://markdownregistry.com/api/v1/resolve?ref=nvidia-bionemo/bionemo-agent-toolkit/molmim-nim GET https://markdownregistry.com/api/v1/blob/14f8ac899092f06fd55f3f1f9efad1aa700420d0c91d75da6853ea0e1b6f0853
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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