bio-chipseq-motif-analysis SKILL.md skillA
bio-chipseq-motif-analysis from fridrichmethod/awesome-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add fridrichmethod/awesome-skills/bio-chipseq-motif-analysis@git:20260517.81511a7Pins git:20260517.81511a7 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- fridrichmethod/awesome-skills
- Path
skills/bio-chipseq-motif-analysis/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260517.81511a7, committed May 17, 2026
- Size
- 10,488 bytes
- Repository stars
- 15
- License
- a license file GitHub does not identify
De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. Identify transcription factor binding motifs in ChIP-seq, ATAC-seq, or other genomic peak data. Use when finding enriched DNA motifs in peak sequences.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
## Version Compatibility Reference examples tested with: BioPython 1.83+, bedtools 2.31+, matplotlib 3.8+, pandas 2.2+ Before using code patterns, verify installed versions match. If versions differ: - Python: `pip show <package>` then `help(module.function)` to check signatures - CLI: `<tool> --version` then `<tool> --help` to confirm flags If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying. # Motif Analysis **"Find enriched motifs in my ChIP-seq peaks"** → Discover de novo DNA-binding motifs and test for known TF motif enrichment in peak sequences. - CLI: `findMotifsGenome.pl peaks.bed hg38 output/` (HOMER), `meme-chip -db JASPAR peaks.fa` (MEME) Identify DNA sequence motifs enriched in ChIP-seq or ATAC-seq peaks to discover transcription factor binding sites. ## Tool Comparison | Tool | Strengths | Use Case | |------|-----------|----------| | HOMER | Fast, comprehensive, built-in databases | General motif analysis | | MEME-ChIP | Multiple algorithms, web interface | Publication-quality | | MEME | De novo discovery only | Simple discovery | …
Read the whole file at its exact version.
How to install
mdr add fridrichmethod/awesome-skills/bio-chipseq-motif-analysis@sha256:d71cdbb11aec2183The line at the top of this page pins the label git:20260517.81511a7, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_6mt4r3errxcsx7f2)
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Versions
The registry has recorded 1 version of this file, committed on May 17, 2026.
Audit of the latest version
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Source
fridrichmethod/awesome-skills · 15 stars · license a license file GitHub does not identify · pushed 2026-11-02 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_6mt4r3errxcsx7f2 GET https://markdownregistry.com/api/v1/resolve?ref=fridrichmethod/awesome-skills/bio-chipseq-motif-analysis GET https://markdownregistry.com/api/v1/blob/d71cdbb11aec21837a7af515c1e618e888cd3a190fdbf4f8c2a90678f52e3ef0
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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