106 instruction files for AI agents, collected from fridrichmethod/awesome-skills. Install any of them at an exact version with mdr add fridrichmethod/awesome-skills/<name>.
13c-metabolic-flux SKILL.md skill
fridrichmethod/awesome-skills · skills/13c-metabolic-flux/SKILL.md · Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom…
v1.2 · audit A · 15 stars
aav-vector-design-agent SKILL.md skill
fridrichmethod/awesome-skills · skills/aav-vector-design-agent/SKILL.md · AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter…
git:20260520.7a7a671 · audit A · 15 stars
bio-metagenomics-abundance SKILL.md skill
fridrichmethod/awesome-skills · skills/abundance-estimation/SKILL.md · Turns shotgun classifier output into a defensible abundance table with Bracken Bayesian re-estimation, then…
git:20260614.5d4591c · audit A · 15 stars
academic-humanizer SKILL.md skill
fridrichmethod/awesome-skills · skills/academic-humanizer/SKILL.md · "Improve the clarity and voice of AI-assisted academic writing (papers, theses, rebuttals) and
v0.3.3 · audit A · 15 stars
academic-paper-reviewer SKILL.md skill
fridrichmethod/awesome-skills · skills/academic-paper-reviewer/SKILL.md · Multi-perspective academic paper review with dynamic reviewer personas. Runs a 5-seat, role-separated review panel…
v1.11.1 · audit A · 15 stars
academic-paper SKILL.md skill
fridrichmethod/awesome-skills · skills/academic-paper/SKILL.md · 12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format…
v3.3.1 · audit A · 15 stars
academic-pipeline SKILL.md skill
fridrichmethod/awesome-skills · skills/academic-pipeline/SKILL.md · Orchestrator for the full academic research pipeline: research -> write -> integrity check -> review -> revise ->…
v3.23.0 · audit A · 15 stars
academic-writing SKILL.md skill
fridrichmethod/awesome-skills · skills/academic-writing/SKILL.md · Scholarly writing and research compliance. Use for CRediT, preregistration, Plan S, Nelson Memo, preprints, ORCID, LLM…
git:20260823.528ff10 · audit A · 15 stars
academy-guide SKILL.md skill
fridrichmethod/awesome-skills · skills/academy-guide/SKILL.md · Stop and check this skill before finishing any reply to a question about how to use Claude or a Claude product — it…
git:20260823.528ff10 · audit A · 15 stars
access SKILL.md skill
fridrichmethod/awesome-skills · skills/access/SKILL.md · Manage Discord channel access — approve pairings, edit allowlists, set DM/group policy. Use when the user asks to pair…
git:20261004.abbbdf3 · audit A · 15 stars
accessibility-compliance SKILL.md skill
fridrichmethod/awesome-skills · skills/accessibility-compliance/SKILL.md · Implement WCAG 2.2 compliant interfaces with mobile accessibility, inclusive design patterns, and assistive technology…
git:20260524.1fee1b9 · audit A · 15 stars
bio-clinical-databases-acmg-classification SKILL.md skill
fridrichmethod/awesome-skills · skills/acmg-classification/SKILL.md · Applies ACMG/AMP 2015 framework with ClinGen SVI specifications, Tavtigian 2018/2020 Bayesian point system, Abou Tayoun…
git:20260726.5bc48c3 · audit A · 15 stars
bio-read-qc-adapter-trimming SKILL.md skill
fridrichmethod/awesome-skills · skills/adapter-trimming/SKILL.md · Removes sequencing adapters from FASTQ reads with Cutadapt and Trimmomatic, including paired-end read-through…
git:20260621.036f7d0 · audit A · 15 stars
bio-clinical-biostatistics-adaptive-designs SKILL.md skill
fridrichmethod/awesome-skills · skills/adaptive-designs/SKILL.md · Designs adaptive clinical trials including group-sequential (O'Brien-Fleming, Pocock, Lan-DeMets spending), sample-size…
git:20260719.44d7640 · audit A · 15 stars
adaptyv-bio SKILL.md skill
fridrichmethod/awesome-skills · skills/adaptyv-bio/SKILL.md · API + Python SDK for ordering cell-free protein expression and binding assays. Submit sequences for expression (10–100…
git:20260517.81511a7 · audit A · 15 stars
adaptyv SKILL.md skill
fridrichmethod/awesome-skills · skills/adaptyv/SKILL.md · Uses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit…
v1.5 · audit A · 15 stars
adhd-daily-planner SKILL.md skill
fridrichmethod/awesome-skills · skills/adhd-daily-planner/SKILL.md · Time-blind friendly planning, executive function support, and daily structure for ADHD brains. Specializes in realistic…
git:20260517.81511a7 · audit A · 15 stars
bio-admet-prediction SKILL.md skill
fridrichmethod/awesome-skills · skills/admet-prediction/SKILL.md · Predicts ADMET properties using ADMETlab 3.0 (119 platform features, including 77 prediction models with…
git:20260719.44d7640 · audit A · 15 stars
aeon SKILL.md skill
fridrichmethod/awesome-skills · skills/aeon/SKILL.md · scikit-learn compatible Python toolkit for time series ML: classify, cluster, regress, segment, transform with 30+…
git:20260517.81511a7 · audit A · 15 stars
agent-browser SKILL.md skill
fridrichmethod/awesome-skills · skills/agent-browser/SKILL.md · Browse the web for any task — research topics, read articles, interact with web apps, fill forms, take screenshots…
git:20260517.81511a7 · audit A · 15 stars
agent-development SKILL.md skill
fridrichmethod/awesome-skills · skills/agent-development/SKILL.md · This skill should be used when the user asks to "create an agent", "add an agent", "write a subagent", "agent…
v0.1.0 · audit A · 15 stars
agent-harness-construction SKILL.md skill
fridrichmethod/awesome-skills · skills/agent-harness-construction/SKILL.md · Design and optimize AI agent action spaces, tool definitions, and observation formatting for higher completion rates.
git:20260517.81511a7 · audit A · 15 stars
agentd-drug-discovery SKILL.md skill
fridrichmethod/awesome-skills · skills/agentd-drug-discovery/SKILL.md · Use the AgentD workflow to mine evidence, design molecules, and rank candidates with SAR plus ADMET annotations for…
git:20260520.7a7a671 · audit A · 15 stars
agentic-engineering SKILL.md skill
fridrichmethod/awesome-skills · skills/agentic-engineering/SKILL.md · Operate as an agentic engineer using eval-first execution, decomposition, and cost-aware model routing.
git:20260517.81511a7 · audit A · 15 stars
bio-clip-seq-ago-clip-mirna-targets SKILL.md skill
fridrichmethod/awesome-skills · skills/ago-clip-mirna-targets/SKILL.md · Identify direct miRNA-target interactions from AGO HITS-CLIP, AGO-CLEAR-CLIP (chimeric reads), HEAP (Halo-Ago2 mouse)…
git:20260726.5bc48c3 · audit A · 15 stars
ai-analyzer SKILL.md skill
fridrichmethod/awesome-skills · skills/ai-analyzer/SKILL.md · AI驱动的综合健康分析系统，整合多维度健康数据、识别异常模式、预测健康风险、提供个性化建议。支持智能问答和AI健康报告生成。
git:20260517.81511a7 · audit A · 15 stars
ai-debt-detector SKILL.md skill
fridrichmethod/awesome-skills · skills/ai-debt-detector/SKILL.md · Use after generating code, after accepting AI suggestions, or when reviewing AI-written modules. Also use when code…
git:20260712.2ff971b · audit A · 15 stars
ai-first-engineering SKILL.md skill
fridrichmethod/awesome-skills · skills/ai-first-engineering/SKILL.md · Engineering operating model for teams where AI agents generate a large share of implementation output.
git:20260517.81511a7 · audit A · 15 stars
ai-regression-testing SKILL.md skill
fridrichmethod/awesome-skills · skills/ai-regression-testing/SKILL.md · Regression testing strategies for AI-assisted development. Sandbox-mode API testing without database dependencies…
git:20260517.81511a7 · audit A · 15 stars
ai-writing-detox SKILL.md skill
fridrichmethod/awesome-skills · skills/ai-writing-detox/SKILL.md · Eliminates AI-generated writing patterns that erode reader trust. Use when writing or editing articles, docs, or press…
git:20260823.528ff10 · audit A · 15 stars
airflow-dag-patterns SKILL.md skill
fridrichmethod/awesome-skills · skills/airflow-dag-patterns/SKILL.md · Build production Apache Airflow DAGs with best practices for operators, sensors, testing, and deployment. Use when…
git:20260524.1fee1b9 · audit A · 15 stars
aizynthfinder-retrosynthesis SKILL.md skill
fridrichmethod/awesome-skills · skills/aizynthfinder-retrosynthesis/SKILL.md · AiZynthFinder retrosynthetic route planning (CASP) from AstraZeneca Molecular AI. Monte Carlo tree search guided by a…
git:20260823.528ff10 · audit A · 15 stars
algorithmic-art SKILL.md skill
fridrichmethod/awesome-skills · skills/algorithmic-art/SKILL.md · Creating algorithmic art using p5.js with seeded randomness and interactive parameter exploration. Use this when users…
git:20260517.ff23801 · audit B · 15 stars
bio-alignment-amplicon-clipping SKILL.md skill
fridrichmethod/awesome-skills · skills/alignment-amplicon-clipping/SKILL.md · Trim PCR primers from aligned reads in amplicon-panel BAMs using samtools ampliconclip. Use when processing SARS-CoV-2…
git:20260712.2ff971b · audit A · 15 stars
bio-alignment-filtering SKILL.md skill
fridrichmethod/awesome-skills · skills/alignment-filtering/SKILL.md · Filter alignments by flags, mapping quality, and regions using samtools view and pysam. Use when extracting specific…
git:20260712.2ff971b · audit A · 15 stars
bio-rna-quantification-alignment-free-quant SKILL.md skill
fridrichmethod/awesome-skills · skills/alignment-free-quant/SKILL.md · Quantify transcript expression from FASTQ with Salmon (selective alignment) or kallisto (pseudoalignment), bypassing…
git:20260628.aa12f9b · audit A · 15 stars
bio-alignment-indexing SKILL.md skill
fridrichmethod/awesome-skills · skills/alignment-indexing/SKILL.md · Create and use BAI/CSI indices for BAM/CRAM files using samtools and pysam. Use when enabling random access to…
git:20260712.2ff971b · audit A · 15 stars
bio-alignment-io SKILL.md skill
fridrichmethod/awesome-skills · skills/alignment-io/SKILL.md · Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP…
git:20260531.6e617c4 · audit A · 15 stars
bio-alignment-sorting SKILL.md skill
fridrichmethod/awesome-skills · skills/alignment-sorting/SKILL.md · Sort alignment files by coordinate or read name using samtools and pysam. Use when preparing BAM files for indexing…
git:20260712.2ff971b · audit A · 15 stars
bio-alignment-trimming SKILL.md skill
fridrichmethod/awesome-skills · skills/alignment-trimming/SKILL.md · Trim multiple sequence alignments using ClipKIT, trimAl, BMGE, Divvier, or HMMcleaner with mode selection guidance per…
git:20260712.2ff971b · audit A · 15 stars
bio-alignment-validation SKILL.md skill
fridrichmethod/awesome-skills · skills/alignment-validation/SKILL.md · Validate alignment quality with insert size distribution, proper pairing rates, GC bias, strand balance, and other…
git:20260712.2ff971b · audit A · 15 stars
bio-atac-seq-allele-specific-accessibility SKILL.md skill
fridrichmethod/awesome-skills · skills/allele-specific-accessibility/SKILL.md · Detect allele-specific chromatin accessibility from ATAC-seq using WASP, GATK ASEReadCounter, or RASQUAL. Use when…
git:20260719.44d7640 · audit A · 15 stars
bio-chipseq-allele-specific-binding SKILL.md skill
fridrichmethod/awesome-skills · skills/allele-specific-binding/SKILL.md · Detects allele-specific transcription factor or histone modification binding from heterozygous-variant ChIP-seq using…
git:20260719.44d7640 · audit A · 15 stars
bio-copy-number-allele-specific-copy-number SKILL.md skill
fridrichmethod/awesome-skills · skills/allele-specific-copy-number/SKILL.md · Infer integer allele-specific copy number, tumor purity, and ploidy from tumor sequencing by jointly modeling read…
git:20260726.5bc48c3 · audit A · 15 stars
alpha-vantage SKILL.md skill
fridrichmethod/awesome-skills · skills/alpha-vantage/SKILL.md · Access real-time and historical stock market data, forex rates, cryptocurrency prices, commodities, economic…
git:20260517.81511a7 · audit A · 15 stars
alphafold-database-access SKILL.md skill
fridrichmethod/awesome-skills · skills/alphafold-database-access/SKILL.md · Access AlphaFold DB's 200M+ predicted structures by UniProt ID. Download PDB/mmCIF, analyze pLDDT/PAE, bulk-fetch…
git:20260520.7a7a671 · audit A · 15 stars
alphafold-database SKILL.md skill
fridrichmethod/awesome-skills · skills/alphafold-database/SKILL.md · Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files…
git:20260517.81511a7 · audit A · 15 stars
bio-structural-biology-alphafold-predictions SKILL.md skill
fridrichmethod/awesome-skills · skills/alphafold-predictions/SKILL.md · Retrieves and interprets AlphaFold Protein Structure Database (AFDB) models by UniProt accession, reading pLDDT and PAE…
git:20260705.1380472 · audit A · 15 stars
alphafold SKILL.md skill
fridrichmethod/awesome-skills · skills/alphafold/SKILL.md · "Validate protein designs using AlphaFold2 structure prediction. Use this skill when: (1) Validating designed sequences…
git:20260614.5d4591c · audit A · 15 stars
alphafold-database-fetch-and-analyze SKILL.md skill
fridrichmethod/awesome-skills · skills/alphafold_database_fetch_and_analyze/SKILL.md · Retrieve and analyze AlphaFold predicted structures for a protein. Use when the user provides a specific UniProt…
git:20260705.1380472 · audit A · 15 stars
alphagenome SKILL.md skill
fridrichmethod/awesome-skills · skills/alphagenome/SKILL.md · Looks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18…
v1.2 · audit A · 15 stars
alphagenome-atlas-website-links SKILL.md skill
fridrichmethod/awesome-skills · skills/alphagenome_atlas_website_links/SKILL.md · Constructs deep-links and URLs for the AlphaGenome Atlas website. Supports generating single-variant exploration links…
git:20260913.5d8c8f0 · audit A · 15 stars
alphagenome-single-variant-analysis SKILL.md skill
fridrichmethod/awesome-skills · skills/alphagenome_single_variant_analysis/SKILL.md · Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP)…
git:20260913.5d8c8f0 · audit A · 15 stars
alphagenome-variant-impact-score SKILL.md skill
fridrichmethod/awesome-skills · skills/alphagenome_variant_impact_score/SKILL.md · Score, annotate, and analyze the functional impact of genetic variants using AlphaGenome Variant Impact (AVI) scores…
git:20260913.5d8c8f0 · audit A · 15 stars
bio-microbiome-amplicon-processing SKILL.md skill
fridrichmethod/awesome-skills · skills/amplicon-processing/SKILL.md · Infers exact amplicon sequence variants (ASVs) from demultiplexed 16S rRNA or ITS amplicon FASTQ with DADA2 - removing…
git:20260614.5d4591c · audit A · 15 stars
bio-metagenomics-amr-detection SKILL.md skill
fridrichmethod/awesome-skills · skills/amr-detection/SKILL.md · Profiles the antimicrobial-resistance gene content (resistome) of shotgun metagenomes - read-based quantification with…
git:20260614.5d4591c · audit A · 15 stars
bio-epidemiological-genomics-amr-surveillance SKILL.md skill
fridrichmethod/awesome-skills · skills/amr-surveillance/SKILL.md · Detects acquired antimicrobial-resistance determinants and chromosomal point-mutation resistance in bacterial…
git:20260531.6e617c4 · audit A · 15 stars
analytical-method-validation SKILL.md skill
fridrichmethod/awesome-skills · skills/analytical-method-validation/SKILL.md · Plans, executes, and documents validation, verification, and transfer of analytical procedures under the governing…
v2.0 · audit A · 15 stars
bio-analytical-validation SKILL.md skill
fridrichmethod/awesome-skills · skills/analytical-validation/SKILL.md · Treats a ctDNA assay as a molecule-counting experiment at the Poisson edge and builds its analytical-validation case…
git:20260607.d890519 · audit A · 15 stars
bio-comparative-genomics-ancestral-reconstruction SKILL.md skill
fridrichmethod/awesome-skills · skills/ancestral-reconstruction/SKILL.md · Reconstruct ancestral states at internal phylogenetic nodes for sequences (PAML codeml, IQ-TREE --ancestral, GRASP…
git:20260726.5bc48c3 · audit A · 15 stars
android-clean-architecture SKILL.md skill
fridrichmethod/awesome-skills · skills/android-clean-architecture/SKILL.md · Clean Architecture patterns for Android and Kotlin Multiplatform projects — module structure, dependency rules…
git:20260517.81511a7 · audit A · 15 stars
angular-migration SKILL.md skill
fridrichmethod/awesome-skills · skills/angular-migration/SKILL.md · Migrate from AngularJS to Angular using hybrid mode, incremental component rewriting, and dependency injection updates…
git:20260524.1fee1b9 · audit A · 15 stars
anndata-data-structure SKILL.md skill
fridrichmethod/awesome-skills · skills/anndata-data-structure/SKILL.md · Annotated matrices for single-cell genomics. Stores X with obs/var metadata, layers, embeddings (obsm/varm), graphs…
git:20260517.81511a7 · audit A · 15 stars
anndata SKILL.md skill
fridrichmethod/awesome-skills · skills/anndata/SKILL.md · Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem…
v1.4 · audit A · 15 stars
bio-genome-annotation-annotation-qc SKILL.md skill
fridrichmethod/awesome-skills · skills/annotation-qc/SKILL.md · Assesses the quality and completeness of a genome annotation with BUSCO (conserved single-copy ortholog recovery)…
git:20260531.6e617c4 · audit A · 15 stars
bio-genome-annotation-annotation-transfer SKILL.md skill
fridrichmethod/awesome-skills · skills/annotation-transfer/SKILL.md · Transfers gene annotations between genome assemblies via coordinate liftover (UCSC liftOver, CrossMap for same-species…
git:20260531.6e617c4 · audit A · 15 stars
anti-reversing-techniques SKILL.md skill
fridrichmethod/awesome-skills · skills/anti-reversing-techniques/SKILL.md · Understand anti-reversing, obfuscation, and protection techniques encountered during software analysis. Use this skill…
git:20260524.1fee1b9 · audit A · 15 stars
mage-antibody-generator SKILL.md skill
fridrichmethod/awesome-skills · skills/antibody-design-agent/MAGE/SKILL.md · Ab seq forge
v1.0.0 · audit A · 15 stars
antibody-design-agent SKILL.md skill
fridrichmethod/awesome-skills · skills/antibody-design-agent/SKILL.md · An advanced agent for de novo antibody design and optimization using state-of-the-art protein language models (MAGE…
git:20260520.7a7a671 · audit A · 15 stars
api-design-principles SKILL.md skill
fridrichmethod/awesome-skills · skills/api-design-principles/SKILL.md · Master REST and GraphQL API design principles to build intuitive, scalable, and maintainable APIs that delight…
git:20260524.1fee1b9 · audit A · 15 stars
api-design SKILL.md skill
fridrichmethod/awesome-skills · skills/api-design/SKILL.md · REST API design patterns including resource naming, status codes, pagination, filtering, error responses, versioning…
git:20260517.81511a7 · audit A · 15 stars
api-hardening SKILL.md skill
fridrichmethod/awesome-skills · skills/api-hardening/SKILL.md · API hardening for Express, FastAPI, and serverless. Use for rate limiting, CORS, input validation, API keys, or OWASP…
git:20260823.528ff10 · audit C · 15 stars
arbor SKILL.md skill
fridrichmethod/awesome-skills · skills/arbor/SKILL.md · Applies Arbor Hypothesis Tree Refinement to research artifacts with repeatable evaluators, including model training…
v1.6 · audit A · 15 stars
arboreto-grn-inference SKILL.md skill
fridrichmethod/awesome-skills · skills/arboreto-grn-inference/SKILL.md · GRN inference from expression via GRNBoost2 (gradient boosting) or GENIE3 (Random Forest). Load matrix, filter by TFs…
git:20261004.abbbdf3 · audit B · 15 stars
arboreto SKILL.md skill
fridrichmethod/awesome-skills · skills/arboreto/SKILL.md · Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2…
v1.3 · audit A · 15 stars
architecture-decision-records SKILL.md skill
fridrichmethod/awesome-skills · skills/architecture-decision-records/SKILL.md · Write and maintain Architecture Decision Records (ADRs) following best practices for technical decision documentation…
git:20260517.ff23801 · audit A · 15 stars
architecture-patterns SKILL.md skill
fridrichmethod/awesome-skills · skills/architecture-patterns/SKILL.md · Implement proven backend architecture patterns including Clean Architecture, Hexagonal Architecture, and Domain-Driven…
git:20260524.1fee1b9 · audit A · 15 stars
archs4-database SKILL.md skill
fridrichmethod/awesome-skills · skills/archs4-database/SKILL.md · Query ARCHS4 REST API for uniformly processed RNA-seq expression, tissue patterns, co-expression across 1M+ human/mouse…
git:20260830.b77323f · audit A · 15 stars
armored-cart-design-agent SKILL.md skill
fridrichmethod/awesome-skills · skills/armored-cart-design-agent/SKILL.md · AI-powered design of armored CAR-T cells with cytokine/chemokine expression for enhanced solid tumor efficacy…
git:20260520.7a7a671 · audit A · 15 stars
bio-methylation-array-preprocessing SKILL.md skill
fridrichmethod/awesome-skills · skills/array-preprocessing/SKILL.md · Turns raw Illumina Infinium methylation BeadChip IDATs (450K, EPIC, EPICv2) into a defensible beta/M matrix with sesame…
git:20260614.5d4591c · audit A · 15 stars
bio-methylation-array-qc-filtering SKILL.md skill
fridrichmethod/awesome-skills · skills/array-qc-filtering/SKILL.md · Performs probe filtering and sample-level QC on Illumina Infinium methylation arrays (450K / EPIC / EPICv2) to decide…
git:20260614.5d4591c · audit A · 15 stars
article-writing SKILL.md skill
fridrichmethod/awesome-skills · skills/article-writing/SKILL.md · Write articles, guides, blog posts, tutorials, newsletter issues, and other long-form content in a distinctive voice…
git:20260517.81511a7 · audit A · 15 stars
arxiv-database SKILL.md skill
fridrichmethod/awesome-skills · skills/arxiv-database/SKILL.md · Search and retrieve preprints from arXiv via the Atom API. Use this skill when searching for papers in physics…
git:20260517.81511a7 · audit A · 15 stars
arxiv-search SKILL.md skill
fridrichmethod/awesome-skills · skills/arxiv-search/SKILL.md · Search arXiv physics, math, and computer science preprints using natural language queries. Powered by Valyu semantic…
git:20260517.81511a7 · audit A · 15 stars
bio-genome-assembly-assembly-polishing SKILL.md skill
fridrichmethod/awesome-skills · skills/assembly-polishing/SKILL.md · Decides whether and how to polish a draft genome assembly to raise consensus accuracy (QV) with read-type-matched tools…
git:20260531.6e617c4 · audit A · 15 stars
bio-genome-assembly-assembly-qc SKILL.md skill
fridrichmethod/awesome-skills · skills/assembly-qc/SKILL.md · Evaluates genome assembly quality across the three orthogonal axes - contiguity (QUAST auN/NG50/NGx, not bare N50)…
git:20260531.6e617c4 · audit A · 15 stars
bio-population-genetics-association-testing SKILL.md skill
fridrichmethod/awesome-skills · skills/association-testing/SKILL.md · Single-variant common-variant GWAS with plink2 --glm (linear/logistic, Firth) and the linear mixed models GEMMA…
git:20260614.5d4591c · audit A · 15 stars
astropy-astronomy SKILL.md skill
fridrichmethod/awesome-skills · skills/astropy-astronomy/SKILL.md · Core Python library for astronomy/astrophysics: units with dimensional analysis, celestial coordinate transforms…
git:20260517.81511a7 · audit A · 15 stars
astropy SKILL.md skill
fridrichmethod/awesome-skills · skills/astropy/SKILL.md · Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities…
v1.5 · audit A · 15 stars
async-python-patterns SKILL.md skill
fridrichmethod/awesome-skills · skills/async-python-patterns/SKILL.md · Master Python asyncio, concurrent programming, and async/await patterns for high-performance applications. Use when…
git:20260524.1fee1b9 · audit A · 15 stars
bio-atac-seq-atac-peak-calling SKILL.md skill
fridrichmethod/awesome-skills · skills/atac-peak-calling/SKILL.md · Call accessible chromatin regions from ATAC-seq BAM files using MACS3, MACS2, Genrich, or HMMRATAC. Use when…
git:20260719.44d7640 · audit A · 15 stars
bio-atac-seq-atac-qc SKILL.md skill
fridrichmethod/awesome-skills · skills/atac-qc/SKILL.md · ATAC-seq library quality control -- TSS enrichment, FRiP, fragment-size periodicity, library complexity…
git:20260719.44d7640 · audit A · 15 stars
bio-workflows-atacseq-pipeline SKILL.md skill
fridrichmethod/awesome-skills · skills/atacseq-pipeline/SKILL.md · Orchestrates the end-to-end bulk ATAC-seq pipeline from FASTQ to differential accessibility and TF footprints, chaining…
git:20260719.44d7640 · audit A · 15 stars
bio-machine-learning-atlas-mapping SKILL.md skill
fridrichmethod/awesome-skills · skills/atlas-mapping/SKILL.md · Maps query single-cell data onto reference atlases and transfers cell-type labels using scArches surgery (scVI/scANVI)…
git:20260628.aa12f9b · audit A · 15 stars
attack-tree-construction SKILL.md skill
fridrichmethod/awesome-skills · skills/attack-tree-construction/SKILL.md · Build comprehensive attack trees to visualize threat paths. Use when mapping attack scenarios, identifying defense…
git:20260524.1fee1b9 · audit A · 15 stars
auth-implementation-patterns SKILL.md skill
fridrichmethod/awesome-skills · skills/auth-implementation-patterns/SKILL.md · Master authentication and authorization patterns including JWT, OAuth2, session management, and RBAC to build secure…
git:20260524.1fee1b9 · audit A · 15 stars
autodock-vina-docking SKILL.md skill
fridrichmethod/awesome-skills · skills/autodock-vina-docking/SKILL.md · Molecular docking with AutoDock Vina (Python API). Receptor/ligand prep (Meeko + RDKit), grid box, docking, pose and…
git:20260517.81511a7 · audit A · 15 stars
bio-reporting-automated-qc-reports SKILL.md skill
fridrichmethod/awesome-skills · skills/automated-qc-reports/SKILL.md · Aggregates per-tool QC metrics (FastQC, fastp, alignment, quantification, variant calling, single-cell) into one…
git:20260621.036f7d0 · audit A · 15 stars
autonomous-loops SKILL.md skill
fridrichmethod/awesome-skills · skills/autonomous-loops/SKILL.md · Patterns and architectures for autonomous Claude Code loops — from simple sequential pipelines to RFC-driven…
git:20260517.81511a7 · audit A · 15 stars
autonomous-oncology-agent SKILL.md skill
fridrichmethod/awesome-skills · skills/autonomous-oncology-agent/SKILL.md · Precision Oncology
v1.0.0 · audit A · 15 stars
autoskill SKILL.md skill
fridrichmethod/awesome-skills · skills/autoskill/SKILL.md · Analyzes user-requested Screenpipe history windows to detect repeated research workflows, match existing scientific…
v1.6 · audit A · 15 stars
avoid-ai-writing SKILL.md skill
fridrichmethod/awesome-skills · skills/avoid-ai-writing/SKILL.md · Audit and rewrite prose so it stops reading as machine-generated. Use this skill when asked to remove AI-isms, clean up…
git:20260823.528ff10 · audit A · 15 stars
backend-patterns SKILL.md skill
fridrichmethod/awesome-skills · skills/backend-patterns/SKILL.md · Backend architecture patterns, API design, database optimization, and server-side best practices for Node.js, Express…
git:20260517.81511a7 · audit A · 15 stars
backtesting-frameworks SKILL.md skill
fridrichmethod/awesome-skills · skills/backtesting-frameworks/SKILL.md · Build robust backtesting systems for trading strategies with proper handling of look-ahead bias, survivorship bias, and…
git:20260524.1fee1b9 · audit A · 15 stars
bio-crispr-screens-bagel-essentiality SKILL.md skill
fridrichmethod/awesome-skills · skills/bagel-essentiality/SKILL.md · Identifies essential genes from CRISPR-Cas9 fitness screens using BAGEL2 (Kim & Hart 2021 Genome Med), a Bayesian…
git:20260726.5bc48c3 · audit A · 15 stars
bakta-genome-annotation SKILL.md skill
fridrichmethod/awesome-skills · skills/bakta-genome-annotation/SKILL.md · Annotate bacterial and archaeal genomes and plasmids with Bakta's Prodigal/HMM/diamond pipeline. Identifies CDS, ncRNA…
git:20261004.abbbdf3 · audit A · 15 stars