bioservices SKILL.md skillA
bioservices from aicodedecode/awesome-muse-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add aicodedecode/awesome-muse-skills/bioservices@git:20260927.806f3e1Pins git:20260927.806f3e1 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- aicodedecode/awesome-muse-skills
- Path
skills-imported/bioservices/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260927.806f3e1, committed Sep 27, 2026
- Size
- 9,852 bytes
- Repository stars
- 25
- License
- MIT
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# BioServices ## Overview BioServices is a Python package providing programmatic access to approximately 40 bioinformatics web services and databases. Retrieve biological data, perform cross-database queries, map identifiers, analyze sequences, and integrate multiple biological resources in Python workflows. The package handles both REST and SOAP/WSDL protocols transparently. ## When to Use This Skill This skill should be used when: - Retrieving protein sequences, annotations, or structures from UniProt, PDB, Pfam - Analyzing metabolic pathways and gene functions via KEGG or Reactome - Searching compound databases (ChEBI, ChEMBL, PubChem) for chemical information - Converting identifiers between different biological databases (KEGG↔UniProt, compound IDs) - Running sequence similarity searches (BLAST, MUSCLE alignment) - Querying gene ontology terms (QuickGO, GO annotations) - Accessing protein-protein interaction data (PSICQUIC, IntactComplex) - Mining genomic data (BioMart, ArrayExpress, ENA) - Integrating data from multiple bioinformatics resources in a single workflow ## Core Capabilities ### 1. Protein Analysis …
Read the whole file at its exact version.
How to install
mdr add aicodedecode/awesome-muse-skills/bioservices@sha256:b0692ca5755e4dfaThe line at the top of this page pins the label git:20260927.806f3e1, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_a52eheca3xhtflja)
2 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Sep 27, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (9852 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
aicodedecode/awesome-muse-skills · 25 stars · license MIT · pushed 2026-10-10 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_a52eheca3xhtflja GET https://markdownregistry.com/api/v1/resolve?ref=aicodedecode/awesome-muse-skills/bioservices GET https://markdownregistry.com/api/v1/blob/b0692ca5755e4dfa31107781699a2194fa6e096ad13fbea9f2f281df6be3e0a4
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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