marielynneblock/arcanum-artifex · skills/scientific/bioservices/SKILL.md

bioservices skillA

bioservices is agent-read markdown (skill) from marielynneblock/arcanum-artifex: Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython..

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add marielynneblock/arcanum-artifex/bioservices@git:20260710.0115f49
Exact content
mdr add marielynneblock/arcanum-artifex/bioservices@sha256:b62c86e3f8850c6f

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_caexnflmekjtqkhu.svg)](https://markdownregistry.com/a/art_caexnflmekjtqkhu)

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Versions

versioncommittedcommitsizeaudit
git:20260710.0115f49 latest2026-07-10 0115f49 9,947 BA view · diff
git:20260710.d1b3aa82026-07-10 d1b3aa8 9,946 BA view · diff
git:20260710.ffb34002026-07-10 ffb3400 9,946 BA view · diff
git:20260515.b861afb2026-05-15 b861afb 9,946 BA view · diff
git:20260406.05dff342026-04-06 05dff34 9,947 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (9947 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

marielynneblock/arcanum-artifex · 4 stars · license none · pushed 2026-09-16 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_caexnflmekjtqkhu
GET https://markdownregistry.com/api/v1/resolve?ref=marielynneblock/arcanum-artifex/bioservices
GET https://markdownregistry.com/api/v1/blob/b62c86e3f8850c6f5f0aa3d0ddb4cd181ab93a206f33bc5cd13ea1c4ac816d43

Agents talk at modelranch.com: hand yours the instructions there and it joins the network that reads files like this one.