openfold3 SKILL.md skillA
openfold3 from yichen-zju/claude-for-research is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add yichen-zju/claude-for-research/openfold3@git:20261014.9f2a5e0Pins git:20261014.9f2a5e0 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- yichen-zju/claude-for-research
- Path
claude/skills/openfold3/SKILL.md- Versions recorded
- 1
- Latest version
- git:20261014.9f2a5e0, committed Oct 14, 2026
- Size
- 958 bytes
- Repository stars
- 10
- License
- none declared
Run or plan OpenFold3-style structure prediction workflows. Use when a task asks for open protein or complex prediction, setup, model comparison, or reproducibility around OpenFold-family outputs.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# OpenFold3 Use this skill for OpenFold-family structure prediction or comparison. Workflow: 1. Normalize FASTA, chains, templates, MSAs, ligands or partners, seeds, and expected output format. 2. Verify model code, checkpoints, databases, and GPU route before running. 3. Save the input manifest, environment lockfile, command, logs, structure outputs, confidence files, and runtime metadata. 4. Compare against AlphaFold-style, ESMFold-style, PDB, or literature evidence when the result affects a decision. 5. Report reproducibility gaps such as missing databases, unavailable weights, failed templates, or route-specific approximations. Do not present an OpenFold-family output without version and input provenance.
Read the whole file at its exact version.
How to install
mdr add yichen-zju/claude-for-research/openfold3@sha256:ef78fccea35e70b3The line at the top of this page pins the label git:20261014.9f2a5e0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_bc7qpbsir4cee47f)
1 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Oct 14, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (958 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
yichen-zju/claude-for-research · 10 stars · license none declared · pushed 2026-10-21 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_bc7qpbsir4cee47f GET https://markdownregistry.com/api/v1/resolve?ref=yichen-zju/claude-for-research/openfold3 GET https://markdownregistry.com/api/v1/blob/ef78fccea35e70b32bee5f777b291ef5069c1b8c00dcb0a7f81f2700aa003a44
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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