rfd4-proteina-package SKILL.md skillA
rfd4-proteina-package from nvidia-bionemo/bionemo-agent-toolkit is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add nvidia-bionemo/bionemo-agent-toolkit/rfd4-proteina-package@git:20261020.65f97c4Pins git:20261020.65f97c4 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- nvidia-bionemo/bionemo-agent-toolkit
- Path
skills/bionemo-agent-toolkit/skills/rfd4-proteina-package/SKILL.md- Versions recorded
- 1
- Latest version
- git:20261020.65f97c4, committed Oct 20, 2026
- Size
- 4,727 bytes
- Repository stars
- 503
- License
- a license file GitHub does not identify
Use when packaging selected RFD4-Proteina designs, aligned refolds, measured metrics, and filters into a shareable TAR.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Package RFD4-Proteína designs
## Purpose
Create a recipient-facing archive, not a second provenance system. The campaign
ledger remains authoritative; the TAR contains only the files and explanations a
recipient needs to inspect selected designs and refolds.
## Output Format
```text
package/
├── README.md
├── WATERFALL.md
├── metrics.csv
├── inputs/
│ └── <input-name>.cif
└── outputs/
└── <input-name>/
└── <design-id>/
├── <design-id>__design.cif
├── <design-id>__<role>__<backend>__<prediction-id>__refold.cif
└── <design-id>__<role>__<backend>__<prediction-id>__confidence.json
```
The generated design is the oracle input and alignment reference. Include it once.
Transform each copied refold into the design's frame by superimposing the recorded
chain or chains of interest, then write only that aligned refold to the package.
Include confidence JSON when it exists. Do not add a database, manifest, checksum
file, duplicate raw/aligned structures, provenance JSON, filter-results table, or
alignment metadata file.
## Prerequisites
…Read the whole file at its exact version.
How to install
mdr add nvidia-bionemo/bionemo-agent-toolkit/rfd4-proteina-package@sha256:5ee678055a7bd698The line at the top of this page pins the label git:20261020.65f97c4, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_ewhepexzjlevlp47)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Oct 20, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (4727 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
nvidia-bionemo/bionemo-agent-toolkit · 503 stars · license a license file GitHub does not identify · pushed 2026-11-05 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_ewhepexzjlevlp47 GET https://markdownregistry.com/api/v1/resolve?ref=nvidia-bionemo/bionemo-agent-toolkit/rfd4-proteina-package GET https://markdownregistry.com/api/v1/blob/5ee678055a7bd6984ddbfd6be3f1270e10f76205149ec75f9c0f53a88e8dd8f7
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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