codonfm-setup SKILL.md skillA
This file is byte-identical to the first copy the registry indexed, one of 3 indexed copies. Same content hash, so the same checks give both the same grade.
codonfm-setup from nvidia-bionemo/bionemo-agent-toolkit is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add nvidia-bionemo/bionemo-agent-toolkit/codonfm-setup@git:20261009.084a18cPins git:20261009.084a18c in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- nvidia-bionemo/bionemo-agent-toolkit
- Path
skills/bionemo-agent-toolkit/skills/codonfm-setup/SKILL.md- Versions recorded
- 1
- Latest version
- git:20261009.084a18c, committed Oct 9, 2026
- Size
- 13,108 bytes
- Repository stars
- 503
- License
- a license file GitHub does not identify
Set up the public CodonFM v1 repository and download public Encodon checkpoints. Use for requests to build or launch the CodonFM development container, configure local data/checkpoint mounts, verify GPU access, or download public Encodon 80M, 600M, 1B, or Cdwt-1B weights. Do not use for Decodon, Encodon 5B/10B, missense-aggregation, or codon-optimization setup because those implementations are not in the public repository.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# CodonFM public setup Operate from the public CodonFM repository root. Support only the checked-in public v1 code and public Encodon checkpoints. ## Instructions 1. Determine whether the user wants instructions, a downloaded checkpoint, a working model environment, or a combination of these. 2. For setup instructions or runtime work, inspect the supplied files and configuration directly: the [runner](../../src/runner.py), [model configuration](../../src/config.py), [Dockerfile](../../Dockerfile), [launcher](../../run_dev.sh), and [requirements](../../requirements.txt). Runtime setup requires a checkout; a supplied source archive is sufficient for preparing instructions. 3. Check the [public-v1 boundaries](#public-v1-boundaries). For an unsupported request, inspect `MODEL_ARCHITECTURES` in `src/config.py`, the model modules, and any requested script before explaining the boundary and ending that path. Runner argument choices alone do not establish implementation support. 4. Reuse available environments and checkpoints, and choose explicit paths from the user's project. 5. Follow only the requested paths below. Environment setup alone does not …
Read the whole file at its exact version.
How to install
mdr add nvidia-bionemo/bionemo-agent-toolkit/codonfm-setup@sha256:3fefcb9dd2c7897cThe line at the top of this page pins the label git:20261009.084a18c, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_icj3qnyrke7khqfa)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Oct 9, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (13108 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
nvidia-bionemo/bionemo-agent-toolkit · 503 stars · license a license file GitHub does not identify · pushed 2026-11-05 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_icj3qnyrke7khqfa GET https://markdownregistry.com/api/v1/resolve?ref=nvidia-bionemo/bionemo-agent-toolkit/codonfm-setup GET https://markdownregistry.com/api/v1/blob/3fefcb9dd2c7897c43a9029eea03eb3ac1eeeb90fc08a93e4458609e18f5972b
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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