mri-research SKILL.md skillA

mri-research from kewang0622/mri-research-skill is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned
mdr add kewang0622/mri-research-skill/mri-research@v0.14.0

Pins v0.14.0 in mdr.lock. Pin the fingerprint instead.

Audit grade
A, 17 of 17 checks passed
Kind
SKILL.md skill
Repository
kewang0622/mri-research-skill
Path
skills/mri-research/SKILL.md
Versions recorded
16
Latest version
v0.14.0, committed Oct 31, 2026
First version recorded
Sep 20, 2026
Size
4,416 bytes
Repository stars
31
License
MIT

Start here when an MRI task matches no specialist skill, spans several areas, or involves image analysis or spectroscopy: DICOM/NIfTI/BIDS and orientation, registration, segmentation, FreeSurfer, fMRI/GLM, MRS quantification (tested alignment, fitting and water referencing), papers, datasets and tools. Holds shared references (tool setup, formats, evaluation, model calibration, project memory) and routes to the specialist skills.

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# MRFoundry: MRI Research Hub

Find the row that matches the task, open that one file or skill, and work from it.

## Route

| Task | Go to |
|---|---|
| Pulse sequences, RF and gradient waveforms, Pulseq export, Bloch simulation | `pulse-sequence-design` skill |
| k-space to images; T1/T2/T2*, EPG, water-fat (PDFF), ASL, DCE and QSM maps | `mri-reconstruction` skill (QSM: `scripts/qsm_lib.py`) |
| Diffusion (ADC, DTI/DKI, fractions, tractography) | `diffusion-mri` skill |
| Hardware, shimming, field maps, SAR, PNS, receiver noise | `mri-hardware` skill |
| Trained reconstruction networks | `deep-learning-recon` skill |
| Studies, statistics, sample size, write-ups, manuscript reviews, proposals, deliverable checks | `mri-research-workflow` skill (run its writing check and finish check) |
| **MR spectroscopy quantification** | `scripts/mrs_lib.py` here (below) and [quantitative MRI and spectroscopy](references/quantitative-and-spectroscopy.md) |
| Image analysis: registration, segmentation, FreeSurfer, fMRI/GLM, fMRIPrep | [analysis and processing](references/analysis-processing.md) |
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint
mdr add kewang0622/mri-research-skill/mri-research@sha256:75480b8d8d42ff34

The line at the top of this page pins the label v0.14.0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_j7vwtbwj4l3liwzh.svg)](https://markdownregistry.com/a/art_j7vwtbwj4l3liwzh)

1 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 16 versions of this file, between Sep 20, 2026 and Oct 31, 2026, about one every 3 days.

versioncommittedcommitsizeaudit
v0.14.0 latest2026-10-31 e7494be 4,416 BA view · diff
v0.13.02026-10-31 4618a27 4,416 BA view · diff
v0.12.02026-10-31 5e72e16 4,416 BA view · diff
v0.11.02026-10-31 fd03f30 4,340 BA view · diff
v0.11.02026-10-31 e52aacd 4,577 BA view · diff
v0.8.02026-10-10 6e4408e 12,224 BA view · diff
v0.8.02026-10-09 305d420 12,072 BA view · diff
v0.8.02026-10-07 4cc7dff 12,097 BA view · diff
v0.7.02026-09-29 c70057d 11,981 BA view · diff
v0.7.02026-09-28 adaaf21 11,432 BA view · diff
v0.7.02026-09-28 3b06da0 11,017 BA view · diff
v0.7.02026-09-24 90d0c56 10,876 BA view · diff
v0.7.02026-09-24 f90c25f 10,279 BA view · diff
v0.7.02026-09-22 c1cd332 9,465 BA view · diff
v0.6.02026-09-22 6b2c20f 8,906 BA view · diff
v0.5.02026-09-20 079337e 9,444 BA view

Audit of the latest version

A  17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (4416 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

kewang0622/mri-research-skill · 31 stars · license MIT · pushed 2026-11-05 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_j7vwtbwj4l3liwzh
GET https://markdownregistry.com/api/v1/resolve?ref=kewang0622/mri-research-skill/mri-research
GET https://markdownregistry.com/api/v1/blob/75480b8d8d42ff341dd9331df5c8f82177b689d63917156c057c73a0e88079c5

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.

More from kewang0622/mri-research-skill

deep-learning-recon SKILL.md skill
kewang0622/mri-research-skill · skills/deep-learning-recon/SKILL.md · Read before training, fine-tuning, applying or evaluating a neural network for MRI reconstruction: unrolled and…
v0.14.0 · audit A · 31 stars
diffusion-mri SKILL.md skill
kewang0622/mri-research-skill · skills/diffusion-mri/SKILL.md · Read before fitting, converting or reporting diffusion-weighted MRI: ADC, DTI/DKI, IVIM, NODDI, compartment or spectrum…
v0.14.0 · audit A · 31 stars
mri-hardware SKILL.md skill
kewang0622/mri-research-skill · skills/mri-hardware/SKILL.md · Read before any MR hardware or safety calculation: B0 field maps and shimming with current limits, gradient and RF coil…
v0.14.0 · audit A · 31 stars
mri-reconstruction SKILL.md skill
kewang0622/mri-research-skill · skills/mri-reconstruction/SKILL.md · Read before turning MR data into images or parameter maps: raw k-space (Cartesian, radial, spiral, EPI; twix, ISMRMRD…
v0.14.0 · audit A · 31 stars
mri-research-workflow SKILL.md skill
kewang0622/mri-research-skill · skills/mri-research-workflow/SKILL.md · Read before designing, analysing, writing up or reviewing an MRI study: results sections with a claim ledger, referee…
v0.14.0 · audit A · 31 stars
pulse-sequence-design SKILL.md skill
kewang0622/mri-research-skill · skills/pulse-sequence-design/SKILL.md · Read before designing, exporting or simulating an MRI acquisition: pulse sequences, RF and gradient waveforms, k-space…
v0.14.0 · audit A · 31 stars

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