dnanexus-integration SKILL.md skillA
dnanexus-integration from marielynneblock/arcanum-artifex is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add marielynneblock/arcanum-artifex/dnanexus-integration@git:20260710.0115f49Pins git:20260710.0115f49 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- marielynneblock/arcanum-artifex
- Path
skills/scientific/dnanexus-integration/SKILL.md- Versions recorded
- 4
- Latest version
- git:20260710.0115f49, committed Jul 10, 2026
- First version recorded
- Apr 6, 2026
- Size
- 10,649 bytes
- Repository stars
- 4
- License
- none declared
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# DNAnexus Integration ## Overview DNAnexus is a cloud platform for biomedical data analysis and genomics. Build and deploy apps/applets, manage data objects, run workflows, and use the dxpy Python SDK for genomics pipeline development and execution. ## When to Use This Skill This skill should be used when: - Creating, building, or modifying DNAnexus apps/applets - Uploading, downloading, searching, or organising files and records - Running analyses, monitoring jobs, creating workflows - Writing scripts using dxpy to interact with the platform - Setting up dxapp.json, managing dependencies, using Docker - Processing FASTQ, BAM, VCF, or other bioinformatics files - Managing projects, permissions, or platform resources ## Core Capabilities The skill is organised into five main areas, each with detailed reference documentation: ### 1. App Development **Purpose**: Create executable programs (apps/applets) that run on the DNAnexus platform. **Key Operations**: - Generate app skeleton with `dx-app-wizard` - Write Python or Bash apps with proper entry points - Handle input/output data objects - Deploy with `dx build` or `dx build --app` - Test apps on the platform …
Read the whole file at its exact version.
How to install
mdr add marielynneblock/arcanum-artifex/dnanexus-integration@sha256:fa3bc45c72247ce8The line at the top of this page pins the label git:20260710.0115f49, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_jc3kicddjkzhflz7)
5 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 4 versions of this file, between Apr 6, 2026 and Jul 10, 2026, about one every 32 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260710.0115f49 latest | 2026-07-10 | 0115f49 | 10,649 B | A | view · diff |
| git:20260710.ffb3400 | 2026-07-10 | ffb3400 | 10,649 B | A | view · diff |
| git:20260515.b861afb | 2026-05-15 | b861afb | 10,649 B | A | view · diff |
| git:20260406.05dff34 | 2026-04-06 | 05dff34 | 10,650 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (10649 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
marielynneblock/arcanum-artifex · 4 stars · license none declared · pushed 2026-09-19 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_jc3kicddjkzhflz7 GET https://markdownregistry.com/api/v1/resolve?ref=marielynneblock/arcanum-artifex/dnanexus-integration GET https://markdownregistry.com/api/v1/blob/fa3bc45c72247ce856c81c87af816b305618aee685fb17e5d2b0572dc36a65f0
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
More from marielynneblock/arcanum-artifex
Every file in marielynneblock/arcanum-artifex