dnanexus-integration SKILL.md skillA
dnanexus-integration from k-dense-ai/scientific-agent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add k-dense-ai/scientific-agent-skills/dnanexus-integration@v2.3Pins v2.3 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- k-dense-ai/scientific-agent-skills
- Path
skills/dnanexus-integration/SKILL.md- Versions recorded
- 7
- Latest version
- v2.3, committed Oct 1, 2026
- First version recorded
- Jun 11, 2026
- Size
- 12,327 bytes
- Repository stars
- 53,159
- License
- MIT
Builds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Supports DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# DNAnexus Integration ## Purpose Use this skill to build, run, and operate DNAnexus workloads without guessing at platform semantics. It covers: - `dx` CLI and `dxpy` automation - Files, records, folders, projects, and metadata - Apps and applets defined by `dxapp.json` - Jobs, workflow analyses, retries, monitoring, and cost controls - Native workflows, WDL/CWL through dxCompiler, and Nextflow imports The documented baseline was reviewed on **2026-09-30** against `dxpy==0.415.0`, dxCompiler 2.18.0, and the 2026 DNAnexus documentation. Consult `references/sources.md` and current release notes when behavior may have changed. SDK signatures, CLI help, and offline validators were executed locally; examples that transfer data, build, or launch workloads are illustrative and require testing in the target account. No authenticated platform run was performed during this review. ## Operating Contract DNAnexus operations can expose regulated data, delete immutable objects, change permissions, or incur compute and egress charges. Follow these rules: 1. Start read-only. Confirm the user, project ID, region, folder, object IDs, and execution target before mutation. …
Read the whole file at its exact version.
How to install
mdr add k-dense-ai/scientific-agent-skills/dnanexus-integration@sha256:e8fcca26f5558e04The line at the top of this page pins the label v2.3, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_mzxyvpo6s2i6d6ic)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 7 versions of this file, between Jun 11, 2026 and Oct 1, 2026, about one every 19 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| v2.3 latest | 2026-10-01 | a92663a | 12,327 B | A | view · diff |
| v2.2 | 2026-09-30 | ce9e6e9 | 11,796 B | A | view · diff |
| v2.1 | 2026-09-02 | 1e5eeff | 11,796 B | A | view · diff |
| v2.0 | 2026-07-23 | 7191774 | 10,838 B | A | view · diff |
| v2.0 | 2026-07-23 | 53c5897 | 10,538 B | A | view · diff |
| git:20260611.c1150bd | 2026-06-11 | c1150bd | 11,216 B | A | view · diff |
| git:20260611.fe3f715 | 2026-06-11 | fe3f715 | 10,927 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (12327 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
k-dense-ai/scientific-agent-skills · 53,159 stars · license MIT · pushed 2026-10-19 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_mzxyvpo6s2i6d6ic GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/dnanexus-integration GET https://markdownregistry.com/api/v1/blob/e8fcca26f5558e04256a2253c002cc8c8c024c06614fbd7d6e0161e53c5aa519
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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