cite-encode skillA
cite-encode is agent-read markdown (skill) from ammawla/encode-toolkit: Generate proper ENCODE citations for publications, grants, and presentations. Use when the user needs to cite ENCODE data, create bibliography entries, write acknowledgment sections, or ensure compliance with ENCODE data use policy..
Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.
What the file says
# Cite ENCODE Data Properly ## When to Use - User wants to generate proper citations for ENCODE data, tools, and consortium papers - User asks about "citing ENCODE", "BibTeX", "references", "bibliography", or "data citation" - User needs to create a Key Resources Table (STAR Methods) for Cell-family journals - User wants to export citations in BibTeX, RIS, or other reference manager formats - Example queries: "cite the ENCODE experiments I used", "generate BibTeX for my tracked experiments", "how do I cite ENCODE in my paper?" Help the user generate correct citations for ENCODE data following official guidelines. This is the definitive guide to citing ENCODE data in manuscripts, grants, presentations, and supplementary materials. ## ENCODE Citation Requirements ENCODE data use policy requires citing data in publications. Data is freely available with **no embargo** -- unrestricted use upon release. However, proper attribution is both a scientific obligation and a practical necessity: reviewers will check that you have cited data sources correctly, and incomplete citations are a common reason for revision requests. ## Step 0: Assess Publication Trust Before Citing …
Read the whole file at its exact version.
How to install
mdr add ammawla/encode-toolkit/cite-encode@git:20260312.665e731mdr add ammawla/encode-toolkit/cite-encode@sha256:5749e2ca4d012089Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.
[](https://markdownregistry.com/a/art_mkduhgb7bgrnvxbi)
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Versions
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (31880 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
ammawla/encode-toolkit · 20 stars · license AGPL-3.0 · pushed 2026-09-21 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_mkduhgb7bgrnvxbi GET https://markdownregistry.com/api/v1/resolve?ref=ammawla/encode-toolkit/cite-encode GET https://markdownregistry.com/api/v1/blob/5749e2ca4d01208971c8f5a0dc0304554391d738a58ea3fbed146d06c378d9a5
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