bio-reporting-automated-qc-reports SKILL.md skillA
bio-reporting-automated-qc-reports from fridrichmethod/awesome-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add fridrichmethod/awesome-skills/bio-reporting-automated-qc-reports@git:20260621.036f7d0Pins git:20260621.036f7d0 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- fridrichmethod/awesome-skills
- Path
skills/automated-qc-reports/SKILL.md- Versions recorded
- 3
- Latest version
- git:20260621.036f7d0, committed Jun 21, 2026
- First version recorded
- May 17, 2026
- Size
- 12,877 bytes
- Repository stars
- 15
- License
- a license file GitHub does not identify
Aggregates per-tool QC metrics (FastQC, fastp, alignment, quantification, variant calling, single-cell) into one interactive MultiQC report, and guides module scoping, sample-name resolution, large-cohort behavior, and turning the report into an actual QC gate. Use when summarizing QC across many samples, building a shareable quality report, or wiring automated QC into a pipeline.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
## Version Compatibility Reference examples tested with: MultiQC 1.21+ (Plotly era), FastQC 0.12+, STAR 2.7.11+, Subread 2.0+, salmon 1.10+, samtools 1.19+, Picard 3.1+, fastp 0.23+ Before using code patterns, verify installed versions match. If versions differ: - CLI: `<tool> --version` then `<tool> --help` to confirm flags Config keys and defaults move between MultiQC releases (the plotting backend changed from HighCharts to Plotly at 1.20; flat-plot and AI thresholds shifted). When a default matters, confirm it against the installed version: `python -c "import multiqc; print(multiqc.__version__)"` and check that version's `config_defaults.yaml`. If code throws an error, run `multiqc --help` and adapt flags to the installed version rather than retrying. # Automated QC Reports with MultiQC **"Aggregate QC results into one report"** -> Walk a directory of tool outputs, parse the metrics those tools already wrote, and render one interactive HTML report plus a parseable `multiqc_data/` directory. - CLI: `multiqc <dir>` (scans for recognized tool outputs) ## The Load-Bearing Idea: MultiQC Aggregates, It Does Not Measure …
Read the whole file at its exact version.
How to install
mdr add fridrichmethod/awesome-skills/bio-reporting-automated-qc-reports@sha256:522d764409a27413The line at the top of this page pins the label git:20260621.036f7d0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_nppfgstihwpfvfa4)
1 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 3 versions of this file, between May 17, 2026 and Jun 21, 2026, about one every 17 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260621.036f7d0 latest | 2026-06-21 | 036f7d0 | 12,877 B | A | view · diff |
| git:20260531.6e617c4 | 2026-05-31 | 6e617c4 | 2,669 B | A | view · diff |
| git:20260517.81511a7 | 2026-05-17 | 81511a7 | 2,670 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (12877 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
fridrichmethod/awesome-skills · 15 stars · license a license file GitHub does not identify · pushed 2026-10-18 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_nppfgstihwpfvfa4 GET https://markdownregistry.com/api/v1/resolve?ref=fridrichmethod/awesome-skills/bio-reporting-automated-qc-reports GET https://markdownregistry.com/api/v1/blob/522d764409a27413dbf8d907639a81a1f734fd1112b7f88ece3f58039e173a91
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.