Home / ethanyoq / skill-hub · archives/user-installed-skills/pubmed-search/ef35478d4277240c/pubmed-search/SKILL.md · GitHub

pubmed-search skillA

Name: pubmed-search
Author: ethanyoq

pubmed-search is agent-read markdown (skill) from ethanyoq/skill-hub: Search PubMed biomedical literature with natural language queries powered by Valyu semantic search. Full-text access, integrate into your AI projects..

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

What the file says

# PubMed Search

Search the complete PubMed database of biomedical literature using natural language queries powered by Valyu's semantic search API.

## Why This Skill is Powerful

- **No API Parameter Parsing**: Just pass natural language queries directly - no need to construct complex search parameters
- **Semantic Search**: Understands the meaning of your query, not just keyword matching
- **Full-Text Access**: Returns complete article content, not just abstracts
- **Image Links**: Includes figures and images from papers
- **Comprehensive Coverage**: Access to all of PubMed's biomedical literature

## Requirements

1. Node.js 18+ (uses built-in fetch)
2. Valyu API key from https://platform.valyu.ai ($10 free credits)

## CRITICAL: Script Path Resolution

The `scripts/search` commands in this documentation are relative to this skill's installation directory.

Before running any command, locate the script using:

```bash
PUBMED_SCRIPT=$(find ~/.claude/plugins/cache -name "search" -path "*/pubmed-search/*/scripts/*" -type f 2>/dev/null | head -1)
```

Then use the full path for all commands:
```bash
$PUBMED_SCRIPT "CRISPR gene editing" 15
```

## API Key Setup Flow
…

Read the whole file at its exact version.

How to install

Latest version

mdr add ethanyoq/skill-hub/pubmed-search@git:20260919.e8b19bf

Exact content

mdr add ethanyoq/skill-hub/pubmed-search@sha256:9cfc8fea968a38db

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

[![mdr](https://markdownregistry.com/badge/art_oy2rr2pcs4qznkat.svg)](https://markdownregistry.com/a/art_oy2rr2pcs4qznkat)

1 badge views in 30 days

Versions

version	committed	commit	size	audit
git:20260919.e8b19bf latest	2026-09-19	e8b19bf	5,730 B	A	view

Audit of the latest version

A 17 of 17 checks passed. Deterministic, no model, same answer every run.

pass: Frontmatter block present
pass: Frontmatter declares a name
pass: Frontmatter declares a description
pass: Size between 200 bytes and 200 KB (5730 bytes)
pass: No zero-width or bidi control characters
pass: No instruction hidden inside an HTML comment
pass: No link to an exfiltration or paste host
pass: No credential-shaped string
pass: No instruction to send local credentials anywhere
pass: No text hidden with inline styles
pass: No prompt-injection phrasing
pass: No curl or wget piped into a shell
pass: No recursive delete of root, home or parent
pass: No instruction to read or print local credentials
pass: No base64 blob over 200 characters
pass: No link to a raw IP address
pass: No script tag

Source

GitHub

ethanyoq/skill-hub · 10 stars · license MIT · pushed 2026-09-19 · branch mine

API

GET https://markdownregistry.com/api/v1/artifacts/art_oy2rr2pcs4qznkat
GET https://markdownregistry.com/api/v1/resolve?ref=ethanyoq/skill-hub/pubmed-search
GET https://markdownregistry.com/api/v1/blob/9cfc8fea968a38db97139aa3d427490d32fa0191ee2e295f6edf347dfadebe2a

Your agent does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

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