borzoi SKILL.md skillA
borzoi from yichen-zju/claude-for-research is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add yichen-zju/claude-for-research/borzoi@git:20260930.9b33ccfPins git:20260930.9b33ccf in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- yichen-zju/claude-for-research
- Path
skills/borzoi/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260930.9b33ccf, committed Sep 30, 2026
- Size
- 1,089 bytes
- Repository stars
- 10
- License
- none declared
Use Borzoi-style regulatory genomics models for sequence-to-expression or variant-effect analysis. Use when the task asks for noncoding variant impact, regulatory sequence design, or expression prediction.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Borzoi Use this skill for regulatory genomics modeling around sequence, variant, and expression effects. Workflow: 1. Pin genome build, interval coordinates, reference/alternate alleles, cell type or tissue, strand, and window size. 2. Confirm the model route: local checkpoint, managed endpoint, notebook package, or external documented service. Record missing checkpoints as setup work, not as a completed model run. 3. Build input FASTA/variant manifests with source URLs or accession IDs. 4. Save prediction arrays, summary tables, plots, model version, and runtime metadata as artifacts in the run output folder (`outputs/`). 5. Compare predicted effects against GTEx, ENCODE, literature, or other source-backed evidence when available. Keep source-owned genomic coordinates separate from model-owned effect predictions in every output.
Read the whole file at its exact version.
How to install
mdr add yichen-zju/claude-for-research/borzoi@sha256:2a6ba1d7993b4650The line at the top of this page pins the label git:20260930.9b33ccf, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_tofbvuzm4mfsvypj)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Sep 30, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (1089 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
yichen-zju/claude-for-research · 10 stars · license none declared · pushed 2026-10-21 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_tofbvuzm4mfsvypj GET https://markdownregistry.com/api/v1/resolve?ref=yichen-zju/claude-for-research/borzoi GET https://markdownregistry.com/api/v1/blob/2a6ba1d7993b4650d79f606ae7e3335f097e0e22b52a309f520684553b4fb1cf
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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